Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40149
(852 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0771 + 6453130-6454488 38 0.010
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 34 0.17
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442... 33 0.29
03_05_0294 + 22855503-22855946,22856346-22856399 31 1.2
09_06_0317 - 22265786-22267618,22267874-22268446,22268546-222686... 31 1.5
03_02_0221 + 6533643-6533687,6533860-6533955,6535323-6535682,653... 29 4.7
11_02_0012 - 7346282-7347136,7347234-7347593 29 6.2
04_01_0388 + 5126669-5127009,5127293-5127614 29 6.2
01_06_0824 - 32243495-32244319,32244449-32244859 28 8.2
>11_01_0771 + 6453130-6454488
Length = 452
Score = 37.9 bits (84), Expect = 0.010
Identities = 22/65 (33%), Positives = 29/65 (44%)
Frame = +3
Query: 423 QRSEECR*YHQPLGGRTDSRTQXDSCERSKIDPATAVANPNVIFFQGHWHVSFNAS*TEG 602
+++EE R R + D + P TAV N I+F+G W FN S TE
Sbjct: 168 EKAEEARKQINAWARRATGKLITDVLPPRSVGPETAVVLGNAIYFKGKWDRPFNESDTER 227
Query: 603 KRFPR 617
K F R
Sbjct: 228 KPFYR 232
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 33.9 bits (74), Expect = 0.17
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 143 KNVIASPLGVMLLLSLYESGAGAQSKEEIREILGG-GEVKSHHTHTD 280
+NV SPL + + LSL +GAG +++++ LGG G + H +
Sbjct: 35 RNVAFSPLSLHVALSLVAAGAGGATRDQLASALGGPGSAEGLHAFAE 81
>10_08_0106 +
14842748-14843085,14843122-14843250,14844145-14844211,
14847177-14847324,14847998-14848097,14848306-14848384,
14848527-14848687,14848829-14848908,14849319-14849475,
14849575-14849723,14849909-14850076,14850426-14850719,
14851002-14851046,14851213-14851462,14851707-14851835,
14852799-14853039,14853977-14854642
Length = 1066
Score = 33.1 bits (72), Expect = 0.29
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 690 EEFGGKSGSGLPVQRGPGF-PYWAGVLPRPKFY 785
++FG ++ +G+P+ GF PYW G +P P Y
Sbjct: 646 QDFGAENFAGMPMGPAGGFNPYWGGGMPLPMDY 678
>03_05_0294 + 22855503-22855946,22856346-22856399
Length = 165
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 134 ADDKNVIASPLGVMLLLSLYESGAGAQSKEEIREILG 244
A NV SPL + + LSL +GAG +++++ +LG
Sbjct: 41 AGGSNVAFSPLSLHVALSLVAAGAGGATRDQLVSLLG 77
>09_06_0317 -
22265786-22267618,22267874-22268446,22268546-22268677,
22268931-22269137,22269287-22269388,22270742-22271032
Length = 1045
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -2
Query: 254 PPLPQGFPLSLPWTVHRLQTRTRKAAASRLEETL 153
PPLP G PLS P+ QT + A S L +L
Sbjct: 754 PPLPPGLPLSSPFVCPTTQTSEKAAPLSSLLSSL 787
>03_02_0221 +
6533643-6533687,6533860-6533955,6535323-6535682,
6537106-6537177,6537374-6537697
Length = 298
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +3
Query: 684 GNEEFGGKSGSGLPVQRGPGFPYWAGVLPRPKFYGATCNSW 806
G+ E K +PVQ P W VL R KF+G W
Sbjct: 68 GSSEHINKLPPPVPVQEEEEAPEWLDVLLRTKFWGQCKQHW 108
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +2
Query: 113 LKESYNLADD-----KNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGGEV 256
L+ + LADD +NV+ SP+ + L+L SGA + +E+ +LG +
Sbjct: 16 LRLAKRLADDGDNSNRNVVFSPVSLYAALALVASGARGTTLDELVALLGAASL 68
>04_01_0388 + 5126669-5127009,5127293-5127614
Length = 220
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = -3
Query: 664 KRRHCPAS*WXVFFIG----RGNLFPSV*LALNETCQCPWKKMTLGXATAVAG 518
+RR+ PA +F G RG+L PSV ++E C W+++ A AV G
Sbjct: 75 RRRYSPAPVCRLFTAGGNSHRGSLAPSVLFGVDEDYLCTWRQL----AAAVGG 123
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 140 DKNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGGEVKSH 265
DKN+ SPL + L+L +GA ++ ++I LG +H
Sbjct: 31 DKNLAVSPLSLHAALALLGAGARGETLDQIIAFLGPAGGPAH 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,148,611
Number of Sequences: 37544
Number of extensions: 640717
Number of successful extensions: 1860
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1859
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -