Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40149
         (852 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      30   2.1  
SB_36789| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_30912| Best HMM Match : SEA (HMM E-Value=1.1)                       29   3.6  
SB_25995| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_30369| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_11120| Best HMM Match : DUF1080 (HMM E-Value=0.082)                 29   6.3  

>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 12/56 (21%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
 Frame = +1

Query: 319 LTVANKIYVSDQYKLADAFSRTAN-LFRSEVDNINFSAPKNAA-DIINRWADEQTQ 480
           + +AN+++    +++ + F + +   F +E+  +++    N A D +NRW +++T+
Sbjct: 87  ILMANRLFAQMGFEILEEFKKASKESFSAEMALVDYVKNSNGARDTVNRWVEQKTK 142


>SB_36789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 332 IKYTFPTSISWPTRSPGQRICSEAKWTTLTSALRRMPL 445
           + ++FP    WP+    QR+ S   W ++ +  RR PL
Sbjct: 40  VYWSFPQLDPWPSVLAFQRVASHHSWPSVLACQRRGPL 77


>SB_30912| Best HMM Match : SEA (HMM E-Value=1.1)
          Length = 354

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 145 ECDSVSSRRDAAAFLVRVWSRCTVQGRDKGNPWGR 249
           E DSV + +D+ A     W+R  +  + K NPW R
Sbjct: 262 EKDSVDTEKDSVATEKNPWTRRKIPWQRKKNPWTR 296


>SB_25995| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 945

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 202 SRCTVQGRDKGNPWGRGGQESSHTYGLLNQRYAEFHP 312
           S C    RD   PW  G ++SS  Y LL+ R ++  P
Sbjct: 398 SMCIEFTRDNPQPWREGTEKSSFNYLLLDPRVSDNLP 434


>SB_30369| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = -2

Query: 623 HRTWKSFSFCLTCVERNVPVPLE---ENDVRVXN--GRGGVNFASL 501
           H +W +  FC     + +PV      E  V + N  GRGGVNF  L
Sbjct: 45  HGSWPASGFCRAIRSQTLPVGAHYSYEASVSLYNVRGRGGVNFGHL 90


>SB_11120| Best HMM Match : DUF1080 (HMM E-Value=0.082)
          Length = 748

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = -2

Query: 623 HRTWKSFSFCLTCVERNVPVPLE---ENDVRVXN--GRGGVNFASL 501
           H +W +  FC     + +PV      E  V + N  GRGGVNF  L
Sbjct: 45  HGSWPASGFCRAIRSQTLPVGAHYSYEASVSLYNVRGRGGVNFGHL 90


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,236,879
Number of Sequences: 59808
Number of extensions: 683799
Number of successful extensions: 2334
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2333
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)