Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40149
         (852 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26390.1 68415.m03167 serpin, putative / serine protease inhi...    33   0.18 
At4g39920.1 68417.m05654 tubulin folding cofactor C / Porcino (P...    30   1.7  
At3g61680.1 68416.m06912 lipase class 3 family protein contains ...    28   6.9  
At3g45220.1 68416.m04880 serpin, putative / serine protease inhi...    28   6.9  
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ...    28   6.9  
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ...    28   6.9  
At3g14620.1 68416.m01851 cytochrome P450, putative similar to GB...    28   9.1  
At2g37960.1 68415.m04659 expressed protein                             28   9.1  

>At2g26390.1 68415.m03167 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 389

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +2

Query: 128 NLADDKNVIASPLGVMLLLSLYESGAGAQSKEEIREIL 241
           ++A+  NV+ SP+ + +LLSL  +G+   +KEEI   L
Sbjct: 25  DVANGSNVVFSPMSINVLLSLIAAGSNPVTKEEILSFL 62


>At4g39920.1 68417.m05654 tubulin folding cofactor C / Porcino (POR)
           identical to tubulin-folding cofactor C (Porcino; POR)
           GI:20514261 from [Arabidopsis thaliana]; identical to
           cDNA tubulin folding cofactor C  GI:20514260
          Length = 345

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +1

Query: 598 KEKDFHVR*RKRPIKKPDNGVSYSPCFTLETKNL 699
           ++ DF++R R RPI +  NGV ++P + L+ K +
Sbjct: 262 RKSDFYLRVRSRPIIEDSNGVRFAP-YCLDYKGI 294


>At3g61680.1 68416.m06912 lipase class 3 family protein contains
           Pfam profile PF01764: Lipase
          Length = 649

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -1

Query: 522 RGQFCFAHRSLXVSLSLFVRPTVDDISGILRSAEVNVVHFASEQIRCPGERV 367
           R +F F   SL  SLSL V   +     +   A  +VV F S  + C GE++
Sbjct: 413 RAKFQFTGHSLGGSLSLIVNLMLISRGLVSSEAMKSVVTFGSPFVFCGGEKI 464


>At3g45220.1 68416.m04880 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 393

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +2

Query: 131 LADDKNVIASPLGVMLLLSLYESGAGAQSKEEI 229
           +A+  N++ SP+ + +LL L  +G+   +KE+I
Sbjct: 25  VANGSNLVFSPMSINVLLCLIAAGSNCVTKEQI 57


>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
           protein similar to RRM-containing protein SEB-4 [Xenopus
           laevis] GI:8895698; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 244

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +2

Query: 746 PVLGRGFAPAKILRGYLQFLEKNGPQKG 829
           P+ G   APA     YLQF E NGP  G
Sbjct: 171 PMTGVAAAPAAGFYPYLQFAEGNGPVTG 198


>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
           protein similar to RRM-containing protein SEB-4 [Xenopus
           laevis] GI:8895698; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 245

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +2

Query: 746 PVLGRGFAPAKILRGYLQFLEKNGPQKG 829
           P+ G   APA     YLQF E NGP  G
Sbjct: 172 PMTGVAAAPAAGFYPYLQFAEGNGPVTG 199


>At3g14620.1 68416.m01851 cytochrome P450, putative similar to
           GB:Q05047 from [Catharanthus roseus]
          Length = 515

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 754 GPGFCPGQNFTGLPAILGEKRAXKRGYFE 840
           GP FCPGQNF  + A +      +R  FE
Sbjct: 459 GPRFCPGQNFALMEAKMALVLILQRFSFE 487


>At2g37960.1 68415.m04659 expressed protein
          Length = 480

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +1

Query: 340 YVSDQYKLADAFSRTANLFRSEVDNINFSAP 432
           ++ D+Y   + FS+T +LFRSE  ++  ++P
Sbjct: 26  FLVDRYLCDNRFSKTRSLFRSEASSLISNSP 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,387,730
Number of Sequences: 28952
Number of extensions: 477442
Number of successful extensions: 1387
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1387
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)