Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40147
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 34 0.080
12_01_1033 + 10629897-10632311,10633874-10633879 32 0.43
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 32 0.43
10_01_0228 + 2417187-2418061,2418127-2418319,2419011-2419025,241... 30 1.3
11_02_0059 - 7883980-7884141,7884423-7884467,7884629-7884715,788... 29 3.0
09_02_0450 + 9468495-9468528,9468947-9469062,9470031-9470858,947... 29 4.0
03_06_0388 + 33564096-33564485,33564642-33564812,33565125-335651... 29 4.0
01_05_0356 - 21338488-21340062 29 4.0
04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420... 28 5.2
02_04_0295 + 21682029-21683534 28 5.2
06_01_0010 - 151694-151951,152433-152489,152683-152774,153432-15... 28 6.9
08_01_0904 - 8916550-8917730,8917762-8918534,8919200-8920029 27 9.2
03_06_0767 + 36126254-36126264,36126676-36126769,36127068-361273... 27 9.2
02_04_0437 - 22938263-22938273,22938345-22938444,22938727-229389... 27 9.2
01_05_0445 + 22318179-22318229,22321063-22321659,22321795-223221... 27 9.2
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929... 27 9.2
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 34.3 bits (75), Expect = 0.080
Identities = 22/57 (38%), Positives = 27/57 (47%)
Frame = -2
Query: 226 PSRTCPSPNQWRST*RRRGRAPWPVGDTPLPRSGLNLLESRGTTELCRRTGSPY*SP 56
P+R SP + RS RR R+P P +P RS + S RR GSP SP
Sbjct: 229 PARDRGSPPRRRSPPARRERSPAPRSRSPRRRSPVKTTSSHRERSPVRRNGSPRRSP 285
>12_01_1033 + 10629897-10632311,10633874-10633879
Length = 806
Score = 31.9 bits (69), Expect = 0.43
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 162 GARPRRRQVLRHWLGEGQVREGR*IPGHHEEVDV 263
G R +R ++R WL EG R G + G+ +VDV
Sbjct: 178 GRRLKRSVLVRRWLAEGYARGGEDVLGNSTDVDV 211
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 31.9 bits (69), Expect = 0.43
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +3
Query: 126 PERGSGVSPTGQGARPRRRQ---VLRHWLGEGQVREGR*IPGHHEEVDVPVVDRNT 284
P +P G GAR RRQ VLR WL + EG + + ++++VP D NT
Sbjct: 933 PRLLGAAAPPGPGARENRRQCLKVLRLWLERKIMPEGI-LRRYMDDIEVPNDDANT 987
>10_01_0228 +
2417187-2418061,2418127-2418319,2419011-2419025,
2419859-2419975
Length = 399
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = -3
Query: 285 RCSGPRPARPLLHDDLVSTFLPELVLPPTSGEAPDAGGGALPGRW 151
R + P PA+PL DDL+S L L LPP P A + RW
Sbjct: 7 RPTSPAPAQPLEDDDLLSEIL--LRLPPLPSSLPRA--SVVCSRW 47
>11_02_0059 -
7883980-7884141,7884423-7884467,7884629-7884715,
7885746-7885874,7885995-7886151,7886248-7886350,
7887050-7887103,7887334-7887451,7888549-7888700,
7890166-7891852
Length = 897
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -3
Query: 285 RCSGPRP--ARPLLHDDLVSTFLPELVLPPTSGEAPDAGGGALP 160
+CSG +RPL D V L + L P G+A G GALP
Sbjct: 386 KCSGLTRTCSRPLTKMDPVVECLEMMALSPRPGDADYCGNGALP 429
>09_02_0450 +
9468495-9468528,9468947-9469062,9470031-9470858,
9470955-9471107,9471194-9471604
Length = 513
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 98 NRAMS*NRFPLLKSLCITISLTVLS-*YGYIS 6
N M N F LLK LCIT+S LS Y Y+S
Sbjct: 329 NTPMVPNTFLLLKYLCITLSAVTLSPSYDYLS 360
>03_06_0388 +
33564096-33564485,33564642-33564812,33565125-33565145,
33565260-33565467,33566156-33566346,33566465-33566584,
33566703-33566936
Length = 444
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +1
Query: 418 THXKNIYVQYGIVAWGIGCG--EDGTPGVYVDART*GPG 528
TH KN+ V + G C EDGT G++V GPG
Sbjct: 249 THSKNVQVSDCTIKTGDDCVSIEDGTHGLHVTRLVCGPG 287
>01_05_0356 - 21338488-21340062
Length = 524
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 172 GRAPWPVGDTPLPRSGLNLLESRG 101
G+ P P G TPLP G NLL+ RG
Sbjct: 35 GKPPLPPGPTPLPLIG-NLLDLRG 57
>04_04_1457 -
33741048-33741146,33741647-33741760,33741938-33742052,
33742154-33742560,33743342-33743476,33743576-33743970,
33744225-33744916,33745014-33745097,33745195-33745286,
33745374-33745457,33745535-33745714,33746258-33746302,
33746399-33746692,33747199-33747585,33747713-33747899,
33748042-33748118,33748936-33749067,33749315-33749416,
33749744-33749827,33749902-33749992,33750105-33750178,
33750644-33750664,33751433-33751477,33752427-33752561,
33752693-33752752
Length = 1376
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 108 DSSRFSPERGSGVSPTGQGARPRRR 182
+++RF+ GSG S T G+ PRRR
Sbjct: 772 EATRFASISGSGASVTQNGSTPRRR 796
>02_04_0295 + 21682029-21683534
Length = 501
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/26 (57%), Positives = 15/26 (57%)
Frame = -2
Query: 178 RRGRAPWPVGDTPLPRSGLNLLESRG 101
R R P P G TPLP G NLL RG
Sbjct: 34 RSSRPPLPPGPTPLPLIG-NLLSLRG 58
>06_01_0010 -
151694-151951,152433-152489,152683-152774,153432-153531,
153585-154211,154300-154638,154740-154991,155083-155556
Length = 732
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = +3
Query: 138 SGVSPTGQGARPRRRQVLRHWLGEGQVREGR*IPGHHEEVDVPVVDRNTCQ 290
+ V P G RP +++RH+L +G++ GR H + + +P VD +TC+
Sbjct: 15 AAVLPVGFRFRPTDEELVRHYL-KGKI-AGR---SHPDLLLIPDVDLSTCE 60
>08_01_0904 - 8916550-8917730,8917762-8918534,8919200-8920029
Length = 927
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 144 VSPTGQGARPRRRQVLRHWLGEGQV 218
+S +G R RR+ +LR WL EG V
Sbjct: 438 ISMFPRGHRIRRKSLLRRWLAEGLV 462
>03_06_0767 +
36126254-36126264,36126676-36126769,36127068-36127315,
36127391-36127647,36127949-36127998,36128056-36128286,
36128851-36128928,36129315-36129441,36129520-36129629,
36130003-36130152,36131106-36131183,36131293-36131421,
36131502-36131699,36132199-36132342
Length = 634
Score = 27.5 bits (58), Expect = 9.2
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Frame = -1
Query: 281 VPVHDRHVHFFMMTWYL----PS-FPNLSFPQPVAKHLTPAGARSLAGGRHATPTFGAES 117
+P H +H+FM L P+ F ++ +++ P +L G P G S
Sbjct: 143 IPFHLLKLHWFMYRLSLLTLCPTIFKDMKGDAAMSQRSMPTDPSTLYGSGMMQPKSGLVS 202
Query: 116 TGVSRNNRAMS*NRFPLLKSLCITISLTV 30
TG+++ ++ +PL KSL + L V
Sbjct: 203 TGLNQGVGSVPLKGWPLTKSLPTSCLLKV 231
>02_04_0437 -
22938263-22938273,22938345-22938444,22938727-22938908,
22938989-22939092,22939792-22939857,22940032-22940105,
22940241-22940309,22940902-22941028,22941740-22942971,
22943163-22943486,22943500-22943793
Length = 860
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 258 DVPVVDRNTCQSQLRRTRLG 317
+ PV+ R TC Q+RRT LG
Sbjct: 523 EAPVLRRGTCLEQVRRTDLG 542
>01_05_0445 +
22318179-22318229,22321063-22321659,22321795-22322187,
22323410-22323481
Length = 370
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 439 HRYSXSESMGHTRGDPPSSLQVSLSGSPXVHMNVECNWK 323
H + SES T PS ++V + +H+ V+C WK
Sbjct: 276 HHWVLSESQEGT----PSDVRVIVMDKDELHLEVQCRWK 310
>01_01_1166 +
9287840-9288040,9289752-9289799,9292166-9292282,
9293018-9293700,9295214-9297190,9298330-9298441,
9299848-9299904
Length = 1064
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +3
Query: 81 LRHSSVVPRDSSRFSPERGSGVSPTGQGARPRRRQVLR 194
LRH ++ S R P R S +SP ARP RR LR
Sbjct: 77 LRHDKLMIESSKRQFPTRRSRLSP----ARPHRRSRLR 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,386,358
Number of Sequences: 37544
Number of extensions: 456857
Number of successful extensions: 1776
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1773
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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