Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40147
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    39   0.003
AL032637-6|CAA21620.2|  422|Caenorhabditis elegans Hypothetical ...    31   0.51 
AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucle...    31   0.51 
AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so...    31   0.51 
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    31   0.67 
U39848-2|AAT81211.1|  279|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AL033514-30|CAA22091.1|  313|Caenorhabditis elegans Hypothetical...    28   6.2  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 43/160 (26%), Positives = 58/160 (36%), Gaps = 4/160 (2%)
 Frame = +1

Query: 34  VKEIVIHKDFNKG-NLFYDIALLFLETPVDSAPNVGVACLP--PARERAPAGVRCFATGW 204
           V  + IH  +N G    YD A++ +  PV+++      CLP  PA E       C  TGW
Sbjct: 127 VTAVSIHPWYNIGFPSSYDFAIMRIHPPVNTSTTARPICLPSLPAVENR----LCVVTGW 182

Query: 205 GKDKFGKEGRYQVIMKKWTCRSWTGTPAXXXXXXXXXXXXXXXXXXXCAQXGI-PTRTPA 381
           G    G       + +       T                       CA        +  
Sbjct: 183 GSTIEGSSLSAPTLREIHVPLLST----LFCSSLPNYIGRIHLPSMLCAGYSYGKIDSCQ 238

Query: 382 GMTGGRPSCAP*THXKNIYVQYGIVAWGIGCGEDGTPGVY 501
           G +GG   CA   H +      G+V+WGIGC   G PGVY
Sbjct: 239 GDSGGPLMCARDGHWELT----GVVSWGIGCARPGMPGVY 274


>AL032637-6|CAA21620.2|  422|Caenorhabditis elegans Hypothetical
           protein Y43F8C.6 protein.
          Length = 422

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -1

Query: 227 SFPNLSFPQPVAKHLTPAGARSLAGGRHATPTFGAESTG 111
           S P+ S P P + + T AG  +L    HA P  GA  TG
Sbjct: 268 SGPSSSAPGPSSSYSTGAGGGALLSTGHAVPIMGAGGTG 306


>AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine
           nucleotide exchange factorfor RAS protein.
          Length = 1413

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 246 DDLVSTFLPELVLP-PTSGEAPDAGGGALPGRWETRHSH 133
           +DL S  L    +P P   + P  GGG L GR++T  SH
Sbjct: 697 NDLFSLLLERFNIPTPKKLQQPKQGGGPLAGRYDTVQSH 735


>AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos
           homolog protein 1 protein.
          Length = 1493

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 246 DDLVSTFLPELVLP-PTSGEAPDAGGGALPGRWETRHSH 133
           +DL S  L    +P P   + P  GGG L GR++T  SH
Sbjct: 697 NDLFSLLLERFNIPTPKKLQQPKQGGGPLAGRYDTVQSH 735


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 382 GMTGGRPSCAP*THXKNIYVQYGIVAWGIGCGEDGTPGVY 501
           G +GG  +C         +V  G+++WG GC +   PG+Y
Sbjct: 210 GDSGGPFACR---REDGAFVLAGVISWGDGCAQKKQPGIY 246


>U39848-2|AAT81211.1|  279|Caenorhabditis elegans Hypothetical
           protein B0286.6 protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 79  FYDIALLFLETPVDSAPNVGVACLPPA 159
           F DIA+  LE P++ + ++  ACLP A
Sbjct: 120 FNDIAVFELEEPIEFSKDIFPACLPSA 146


>AL033514-30|CAA22091.1|  313|Caenorhabditis elegans Hypothetical
           protein Y75B8A.31 protein.
          Length = 313

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = +1

Query: 16  PYQDRTVKE----IVIHKDFNKGNLFYDIALLFLETPVDSAPNVGVACLPPARERA 171
           PY +R ++     +V++ + N+     D  L +  TPV+ A  V +AC+ P+  ++
Sbjct: 119 PYIERAIENGWGVVVMNTNLNESK---DQDLKYSRTPVEHAETVWIACIEPSNAKS 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,311,219
Number of Sequences: 27780
Number of extensions: 331831
Number of successful extensions: 963
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)