Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40147
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    29   0.049
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          25   0.45 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   2.4  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   4.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   7.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.8  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   9.8  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 0.049
 Identities = 36/133 (27%), Positives = 44/133 (33%), Gaps = 1/133 (0%)
 Frame = +1

Query: 85  DIALLFLETPVDSAPNVGVACLPPARERAP-AGVRCFATGWGKDKFGKEGRYQVIMKKWT 261
           DIALL  E  +     VG ACLP        AG      GWG   F   G    I++K T
Sbjct: 257 DIALLKTEKDIKFGDKVGPACLPFQHFLDSFAGSDVTVLGWGHTSFN--GMLSHILQKTT 314

Query: 262 CRSWTGTPAXXXXXXXXXXXXXXXXXXXCAQXGIPTRTPAGMTGGRPSCAP*THXKNIYV 441
               T                       CA      +    M  G P        K + V
Sbjct: 315 LNMLTQVECYKYYGNIMVNAM-------CAYA--KGKDACQMDSGGPVLWQNPRTKRL-V 364

Query: 442 QYGIVAWGIGCGE 480
             GI++WG  CG+
Sbjct: 365 NIGIISWGAECGK 377


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 168 RPRRRQVLRHWLGEGQVREGR*IPGHH-EEVDVPV 269
           R   R+  R   G G+ RE R IP H+ E++  PV
Sbjct: 308 RETSRERSRDRRGRGRSREHRIIPSHYIEQIPAPV 342


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 266 RHVHFFMMTWYLPS 225
           R + FFMM +Y+PS
Sbjct: 229 REMGFFMMDYYIPS 242


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 489 SAVLSAAYAPGYDAVLDIDI 430
           +A+ S +Y PG    +D+D+
Sbjct: 45  AAIKSGSYIPGASLPIDVDV 64


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 115 VDSAPNVGVACLPPARERAPAG 180
           + SAP+   +  PPA+  A AG
Sbjct: 517 IASAPSSSTSSSPPAKGAAAAG 538


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +1

Query: 4   KEIYPYQDRTVKEIVIHKDFNKGNLFYDIALL 99
           K+ YP  D    +I  +    +  LFY + L+
Sbjct: 212 KKYYPCCDEPYPDIFFNITLRRKTLFYTVNLI 243


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 232 RYQVIMKKWTCRSWT 276
           RYQ I  KW  RS T
Sbjct: 79  RYQPISYKWITRSGT 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,417
Number of Sequences: 438
Number of extensions: 4012
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)