Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40147
         (623 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25490.1 68418.m03033 zinc finger (Ran-binding) family protei...    29   1.9  
At3g49290.1 68416.m05387 expressed protein                             28   4.4  
At3g21290.1 68416.m02690 dentin sialophosphoprotein-related cont...    28   5.8  
At5g11660.1 68418.m01363 hypothetical protein many predicted pro...    27   7.7  
At1g10390.1 68414.m01171 nucleoporin family protein contains Pfa...    27   7.7  

>At5g25490.1 68418.m03033 zinc finger (Ran-binding) family protein
           contains Pfam domain, PF00641: Zn-finger in Ran binding
           protein and others
          Length = 170

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -2

Query: 172 GRAPWPVGDTPLPRSGLNLLESRGTTELCRRTGSP 68
           GR+PW  GD   PRSG N       +E C R  +P
Sbjct: 128 GRSPWKSGDWICPRSGCNEHNFASRSE-CFRCNAP 161


>At3g49290.1 68416.m05387 expressed protein
          Length = 312

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -1

Query: 206 PQPVAKHLTPAGARSLAGGRHATPTFGAESTGVSRNNRAMS*NRFPLLKS 57
           P PV K  + + +      R AT +F +      ++ R++S +RFPLL+S
Sbjct: 179 PPPVRKSTSQSSSPRQPPQRSATFSFTSTIPKKEQDKRSVSPHRFPLLRS 228


>At3g21290.1 68416.m02690 dentin sialophosphoprotein-related
           contains weak similarity to Dentin sialophosphoprotein
           precursor (Swiss-Prot:Q9NZW4) [Homo sapiens]
          Length = 1192

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -1

Query: 230 PSFPNLSFPQPVAKHLTPAGARSL--AGGRHATPTFGAESTGV 108
           PS    SFP P  +H +P G  S    GG  A P   + ST V
Sbjct: 21  PSRNRNSFPPPTNRHPSPIGRMSSGGGGGGSAAPRQRSNSTSV 63


>At5g11660.1 68418.m01363 hypothetical protein many predicted
           proteins, Arabidopsis thaliana
          Length = 308

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 198 SGEAPDAGGGALPGRWETRHSHVRG 124
           SG +P  G G LP   E + +HV+G
Sbjct: 230 SGISPPMGNGQLPSEDENKSAHVKG 254


>At1g10390.1 68414.m01171 nucleoporin family protein contains Pfam
           profiles: PF04096 nucleoporin autopeptidase, PF03093
           nucleoporin FG repeat family
          Length = 1041

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -1

Query: 230 PSFPNLSFPQ--PVAKHLTPA-GARSLAG-GRHATPTFGAEST 114
           P+F N SF    P     TPA GA S    G  +TP+FGA ST
Sbjct: 133 PAFGNTSFGSSTPFGATNTPAFGAPSTPSFGATSTPSFGASST 175


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,705,362
Number of Sequences: 28952
Number of extensions: 307889
Number of successful extensions: 954
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)