Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40146
         (778 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    26   0.29 
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    25   0.89 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   3.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   3.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   3.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   3.6  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 321 STWMISSVSTPTKTKLNLFLTSGRSLTPRTIPFGM 425
           S W I    +P   +   FL +GRS T + +PFG+
Sbjct: 399 SYWQIPL--SPESRQYTAFLYNGRSYTYQVLPFGL 431


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -1

Query: 472 TAHEHLSEFLRVF--VFGIPNGIVLGVKLLPEVRNRFSFVFV 353
           T H HLS+ +R+F  +FG    ++ G+  L   +  F+   V
Sbjct: 856 TLHHHLSKLIRLFNEIFGHGLLLMFGISFLLVTQTIFALCVV 897


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/39 (20%), Positives = 20/39 (51%)
 Frame = -3

Query: 743 STRLCRFRSNEKVVLGQSFLVLLARRIQFLPVVGLVVHL 627
           S+R+C F+S++K       +V     +  + +  L+ ++
Sbjct: 150 SSRMCFFKSSKKPAFSHFLIVFFTETLHTVGIALLIFYI 188


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/39 (20%), Positives = 20/39 (51%)
 Frame = -3

Query: 743 STRLCRFRSNEKVVLGQSFLVLLARRIQFLPVVGLVVHL 627
           S+R+C F+S++K       +V     +  + +  L+ ++
Sbjct: 150 SSRMCFFKSSKKPAFSHFLIVFFTETLHTVGIALLIFYI 188


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/39 (20%), Positives = 20/39 (51%)
 Frame = -3

Query: 743 STRLCRFRSNEKVVLGQSFLVLLARRIQFLPVVGLVVHL 627
           S+R+C F+S++K       +V     +  + +  L+ ++
Sbjct: 150 SSRMCFFKSSKKPAFSHFLIVFFTETLHTVGIALLIFYI 188


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/39 (20%), Positives = 20/39 (51%)
 Frame = -3

Query: 743 STRLCRFRSNEKVVLGQSFLVLLARRIQFLPVVGLVVHL 627
           S+R+C F+S++K       +V     +  + +  L+ ++
Sbjct: 150 SSRMCFFKSSKKPAFSHFLIVFFTETLHTVGIALLIFYI 188


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,206
Number of Sequences: 336
Number of extensions: 3830
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)