Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40146
(778 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 78 9e-15
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 67 1e-11
04_04_0334 + 24487878-24487989,24488326-24488561,24488630-244887... 30 1.8
06_01_0611 + 4420873-4422207 30 2.4
06_01_0094 + 779097-779155,779882-781019,781732-782115,782842-78... 29 3.1
01_06_0298 + 28301032-28302408 29 4.1
03_02_0173 + 6138406-6138628,6139769-6139857,6139922-6140608,614... 28 7.2
03_01_0549 - 4102098-4102198,4102394-4102544,4102629-4102760,410... 28 7.2
03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,117... 28 7.2
03_06_0642 + 35239658-35240083,35240167-35240238,35240305-352409... 28 9.5
03_02_0343 - 7649210-7650154 28 9.5
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 77.8 bits (183), Expect = 9e-15
Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Frame = +2
Query: 290 DPFDSMPKGTFNMDDFKRVYSNED---EAKSIPYFWEKFDPENYSIWYAEYKYPEELAKV 460
+P D +P +D++KR+YSN +I FW+ +DPE YS+W+ +YKY +E
Sbjct: 265 NPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVS 324
Query: 461 FMSCNLITGMFQRLDKCANRLSHPSACLVKTTISTISGVWVWRGKEL 601
F++ N + G QR+D C + + G+W++RG E+
Sbjct: 325 FVTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEI 371
Score = 77.8 bits (183), Expect = 9e-15
Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Frame = +2
Query: 290 DPFDSMPKGTFNMDDFKRVYSNED---EAKSIPYFWEKFDPENYSIWYAEYKYPEELAKV 460
+P D +P +D++KR+YSN +I FW+ +DPE YS+W+ +YKY +E
Sbjct: 830 NPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVS 889
Query: 461 FMSCNLITGMFQRLDKCANRLSHPSACLVKTTISTISGVWVWRGKEL 601
F++ N + G QR+D C + + G+W++RG E+
Sbjct: 890 FVTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEI 936
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 67.3 bits (157), Expect = 1e-11
Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Frame = +2
Query: 290 DPFDSMPKGTFNMDDFKRVYSNED---EAKSIPYFWEKFDPENYSIWYAEYKYPEELAKV 460
+P D +P +D++KR+YSN +I FW+ +DPE YS+W+ +YKY +E
Sbjct: 282 NPLDLLPPSKMILDEWKRLYSNTKTNFREIAIKGFWDMYDPEGYSLWFCDYKYNDENTVS 341
Query: 461 FMSCNLITGMFQRLDKCANRLSHPSACLVKTTISTISGVWVWRGKEL 601
F++ N +R+D C + T + G+W++RG+++
Sbjct: 342 FVTMN------KRMDLCRKYAFGKMLVIGSTPPFKVKGLWLFRGQDI 382
>04_04_0334 +
24487878-24487989,24488326-24488561,24488630-24488756,
24488879-24489299,24489300-24489432,24489964-24490050,
24490172-24490288
Length = 410
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = -1
Query: 571 GDGGNCCLHQTGRRMRKPVCAFV*PLEHTRNKVTAHEHLSEFLRVFVFGIPNGIVLGVKL 392
G+GGN CL + G++ + + ++ P++H + K E + V V +P V+
Sbjct: 12 GEGGNGCLPRIGKKESEDLYSY--PVDHDKRKGADRAAAEEVVTVEVPEVP------VRE 63
Query: 391 LPEVRNRFS 365
L E+ N FS
Sbjct: 64 LNEITNSFS 72
>06_01_0611 + 4420873-4422207
Length = 444
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Frame = +2
Query: 32 FVADKRSAL-----VPDRRPPATSVGRRRLAHALC 121
+V D+ +AL P RRPPA S RRRLA + C
Sbjct: 279 YVMDEHAALRVAVRTPKRRPPARSRSRRRLALSEC 313
>06_01_0094 +
779097-779155,779882-781019,781732-782115,782842-783060
Length = 599
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 288 RTPSTRCLKVP--STWMISSVSTPTKTKLNLFLTSGRSLTPRT 410
RTPST +K P S W SVST + NLF ++ L P T
Sbjct: 443 RTPSTP-IKFPAISRWYSVSVSTSINSSSNLFSSAAAVLRPST 484
>01_06_0298 + 28301032-28302408
Length = 458
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 602 VFPLSSDWAGGLRVLRLEETGSFERGEPRNFVPGLLSR 715
VF GG+RV RL G +E +PR +PG ++R
Sbjct: 52 VFDDGDGGGGGVRVERLRGGGMWEPDDPRLRIPGDMAR 89
>03_02_0173 +
6138406-6138628,6139769-6139857,6139922-6140608,
6140682-6140834,6140922-6141290
Length = 506
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +3
Query: 339 SVSTPTKTK-LNLFLTSGRSLTPRTIPFGMPNTNTLRNSLRC 461
S+ P + K L + + S +PF MPN TL S RC
Sbjct: 291 SIGEPLQMKNLQVIFPNSISFGRAELPFSMPNLETLNISSRC 332
>03_01_0549 -
4102098-4102198,4102394-4102544,4102629-4102760,
4102988-4103162,4103494-4103945,4104042-4104121,
4104342-4104408,4104709-4104814,4104924-4105033,
4105133-4105201,4105661-4105771,4106263-4106427,
4106639-4106725,4106974-4107027,4107101-4107240,
4107820-4107897,4108066-4108720
Length = 910
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/59 (28%), Positives = 34/59 (57%)
Frame = +2
Query: 509 CANRLSHPSACLVKTTISTISGVWVWRGKELVFPLSSDWAGGLRVLRLEETGSFERGEP 685
CA L+ P+A L+ T++ G+ + RG +++ L+ G+ + L++TG+ +G P
Sbjct: 531 CALGLATPTAILIGTSLGAKRGLLI-RGGDVLERLA-----GIDAIVLDKTGTLTKGRP 583
>03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,
1178179-1178378,1178505-1178605,1178747-1179369,
1179451-1179546,1179637-1179798,1179889-1180068,
1180173-1180323,1180408-1180641,1180753-1180913,
1181041-1181163,1181261-1181421,1181655-1181877,
1181952-1182346,1182461-1182671,1183536-1184522
Length = 1883
Score = 28.3 bits (60), Expect = 7.2
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Frame = +2
Query: 293 PFDSMPKGTFNMDDFKRVYSNEDEAKSIPYFWEKFDPENYSIWYAEY---KYPEELAKVF 463
P D+ P + ++ V S I ++ + + YSI + E+ KY + V
Sbjct: 794 PVDTSPGSMYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILHPEFIMQKYEKPGGSVE 853
Query: 464 MSCNL---ITGMFQRLDK--CAN-RLSHPSACL 544
SC L F++L+ C++ RL+ + CL
Sbjct: 854 YSCKLQLPCNAPFEKLEGPICSSIRLAQQAVCL 886
>03_06_0642 +
35239658-35240083,35240167-35240238,35240305-35240919,
35241253-35241435,35241604-35241663,35241733-35241936,
35242497-35242745,35243609-35243707,35243760-35243858,
35244463-35244480,35244668-35244862,35244981-35245073,
35245265-35245531,35245884-35246102
Length = 932
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = +2
Query: 8 ARAR-PERPFVADKRSA---LVPDRRPPATSVGRRR 103
+RAR P PF + RS+ PDRRPP T R R
Sbjct: 28 SRARTPRAPFPSTSRSSNPYSFPDRRPPPTPRSRSR 63
>03_02_0343 - 7649210-7650154
Length = 314
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 533 SACLVKTTISTISGVWVWRGKELVFPLSSDW 625
S CL +T++T S V+ W+G E+ +S W
Sbjct: 102 SECLAVSTVNTCSLVFSWKGLEVFDGSNSVW 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,254,093
Number of Sequences: 37544
Number of extensions: 489234
Number of successful extensions: 1593
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1586
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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