Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40146
         (778 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41219| Best HMM Match : EF1G (HMM E-Value=3.3e-38)                  93   3e-19
SB_34637| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)                   30   1.8  
SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_21185| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)                  29   5.5  
SB_17349| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_21856| Best HMM Match : RVT_1 (HMM E-Value=4.5e-32)                 28   9.7  
SB_16292| Best HMM Match : Lipase_GDSL (HMM E-Value=0.036)             28   9.7  
SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             28   9.7  
SB_27034| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.7  

>SB_41219| Best HMM Match : EF1G (HMM E-Value=3.3e-38)
          Length = 90

 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 40/67 (59%), Positives = 53/67 (79%), Gaps = 3/67 (4%)
 Frame = +2

Query: 317 TFNMDDFKRVYSNED-EAKSIPYFWEKFDPENYSIWYAEYK--YPEELAKVFMSCNLITG 487
           + N+D +K+VYSNED E+K+IPYFWE FD E YS+W+ EYK  Y ++L  VFM+CNL+ G
Sbjct: 2   SMNLDAWKKVYSNEDTESKAIPYFWENFDKEGYSLWFLEYKEEYEKDLGMVFMACNLVGG 61

Query: 488 MFQRLDK 508
           M QRL+K
Sbjct: 62  MIQRLEK 68



 Score = 29.1 bits (62), Expect = 4.2
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 484 GYVPEVRQMRKQAFASVCLFGEDNN 558
           G +  + ++ K  F S+C+FGE++N
Sbjct: 61  GMIQRLEKLVKNGFGSICIFGENHN 85


>SB_34637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 202

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +3

Query: 618 LIGQVDYESYDWKKLDPSSEENQETLSQDYFLVGTEPTKTGRKVSTRGR 764
           L+G   +       + P  EEN + LS D+F  G EP    +    R R
Sbjct: 58  LLGLYSHHLVQSMPVSPEEEENDKWLSADFFAGGVEPAFVEQTFKKRSR 106


>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
          Length = 1790

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +3

Query: 618  LIGQVDYESYDWKKLDPSSEENQETLSQDYFLVGTEPTKTGRKVSTRGR 764
            L+G   +       + P  EEN + LS D+F  G EP    +    R R
Sbjct: 1329 LLGLYSHHLVQSMPVSPEEEENDKWLSADFFAGGVEPAFVEQTFKKRSR 1377


>SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2806

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 658  NWILRARRTKKLCPRTTFSLERNRQRRVEKFQPGADI 768
            NW   ARR+K   PR   S   +R+R +E F    D+
Sbjct: 895  NWYSPARRSKTPSPRPPSSRPSSRRRNMESFTKNPDL 931


>SB_21185| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 374

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 632 GLRVLRLEETGSFERGEPRNFVPGLLSRWNGTDK 733
           G RV R+E    + RG+P+   P +++  NG D+
Sbjct: 78  GERVCRMEFGSEYHRGKPKREEPDIVADHNGADR 111


>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
          Length = 765

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +1

Query: 145 KSTRS*MVHRTRRRAKKIRSVKRKSNPRRRRK 240
           +S+RS   HR+  R++  RS KR  +PR+RR+
Sbjct: 270 RSSRSHRKHRSHSRSRSPRS-KRSRSPRKRRR 300


>SB_17349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 628 CPIRRQREHELLSAPHPHSGDGGNCCLHQ 542
           CP+ ++  +E L  P  H   G N  +HQ
Sbjct: 40  CPLSKKSSYEQLDKPDNHQDQGNNDAVHQ 68


>SB_21856| Best HMM Match : RVT_1 (HMM E-Value=4.5e-32)
          Length = 583

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 626 PNQTTAGTRAPFRATPTLRRWWKLLSSPNRQTDAK 522
           PN T A +RAP        R W++L  P  QT A+
Sbjct: 433 PNFTLAASRAPGPGAACRSRRWQVLEEPIIQTPAQ 467


>SB_16292| Best HMM Match : Lipase_GDSL (HMM E-Value=0.036)
          Length = 738

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +3

Query: 576 CGCGAERSSCSRCRLIGQV-DYESYDWKKLDPSSE 677
           CG G E   CS+C     V   E +DW  L+ + E
Sbjct: 130 CGSGPENCKCSKCTDFQTVISAELFDWVPLNKTCE 164



 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +3

Query: 576 CGCGAERSSCSRCRLIGQV-DYESYDWKKLDPSSE 677
           CG G E   CS+C     V   E +DW  L+ + E
Sbjct: 464 CGSGPENCKCSKCTDFQTVISAELFDWVPLNKTCE 498


>SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1120

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 24/85 (28%), Positives = 33/85 (38%)
 Frame = +3

Query: 381 TSGRSLTPRTIPFGMPNTNTLRNSLRCS*AVTLLRVCSRG*TNAQTGFRIRLPVW*RQQF 560
           + GR +    + F  P T T  +S  CS  V  L  C  G    Q G  I      +  +
Sbjct: 462 SQGREINGTRLRFNKPTTCTSNSSSACS-PVMCLMYCEFGFVKDQYGCEIC-----KCAY 515

Query: 561 PPSPECGCGAERSSCSRCRLIGQVD 635
            P+    CG+   SCS  +   Q D
Sbjct: 516 APAKPGFCGSGSLSCSDAQTKCQYD 540


>SB_27034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 629

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 670 RARRTKKLCPRTTFSLERNRQRRVEKFQPG 759
           RARR KKL  RT    +  +++ V+K +PG
Sbjct: 525 RARRAKKLKQRTKAKDKDRKRKLVDKMKPG 554


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,809,584
Number of Sequences: 59808
Number of extensions: 531409
Number of successful extensions: 1820
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1794
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)