Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40146
         (778 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g57720.1 68414.m06549 elongation factor 1B-gamma, putative / ...    74   9e-14
At1g09640.1 68414.m01081 elongation factor 1B-gamma, putative / ...    74   9e-14
At3g54720.1 68416.m06054 glutamate carboxypeptidase, putative  (...    30   1.5  
At2g33010.1 68415.m04045 ubiquitin-associated (UBA)/TS-N domain-...    28   6.0  
At4g14096.1 68417.m02176 F-box family protein contains F-box dom...    28   7.9  

>At1g57720.1 68414.m06549 elongation factor 1B-gamma, putative /
           eEF-1B gamma, putative similar to elongation factor 1B
           gamma GI:3868758 from [Oryza sativa]
          Length = 413

 Score = 74.1 bits (174), Expect = 9e-14
 Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
 Frame = +2

Query: 290 DPFDSMPKGTFNMDDFKRVYSNEDE---AKSIPYFWEKFDPENYSIWYAEYKYPEELAKV 460
           +P D +P     +DD+KR+YSN        +I  FW+ +DPE YS+W+ +YKY +E    
Sbjct: 255 NPLDLLPPSPMVLDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENMVS 314

Query: 461 FMSCNLITGMFQRLDKCANRLSHPSACLVKTT-ISTISGVWVWRGKEL 601
           F++ N + G  QR+D  A + S     +  +     + G+W++RG E+
Sbjct: 315 FVTLNKVGGFLQRMD-LARKYSFGKMLICGSEGPFKVKGLWLFRGPEI 361



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 633 DYESYDWKKLDPSSEENQETLSQ 701
           D E Y+W K+D S E  +E +SQ
Sbjct: 371 DMELYEWTKVDISDEAQKERVSQ 393


>At1g09640.1 68414.m01081 elongation factor 1B-gamma, putative /
           eEF-1B gamma, putative Similar to elongation factor
           1-gamma (gb|EF1G_XENLA). ESTs
           gb|T20564,gb|T45940,gb|T04527 come from this gene
          Length = 414

 Score = 74.1 bits (174), Expect = 9e-14
 Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
 Frame = +2

Query: 290 DPFDSMPKGTFNMDDFKRVYSNEDE---AKSIPYFWEKFDPENYSIWYAEYKYPEELAKV 460
           +P D +P     +DD+KR+YSN        +I  FW+ +DPE YS+W+ +YKY +E    
Sbjct: 256 NPLDLLPPSPMVLDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENMVS 315

Query: 461 FMSCNLITGMFQRLDKCANRLSHPSACLVKTT-ISTISGVWVWRGKEL 601
           F++ N + G  QR+D  A + S     +  +     + G+W++RG E+
Sbjct: 316 FVTLNKVGGFLQRMD-LARKYSFGKMLICGSEGPFKVKGLWLFRGPEI 362



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 633 DYESYDWKKLDPSSEENQETLSQ 701
           D E Y+W K+D S E  +E +SQ
Sbjct: 372 DMELYEWTKVDISDEAQKERVSQ 394


>At3g54720.1 68416.m06054 glutamate carboxypeptidase, putative
           (AMP1) identical to GI:15624092 glutamate
           carboxypeptidase {Arabidopsis thaliana}; ileal
           peptidase, Rattus norvegicus, EMBL:AF009921; identical
           to cDNA glutamate carboxypeptidase (AMP1) GI:15624091;
           contains Pfam profiles PF04389: Peptidase family M28,
           PF04253: Transferrin receptor-like dimerisation domain
           and PF02225 PA domain
          Length = 705

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 475 PYYGYVPEVRQMRKQAFASVCLFGEDNNFHHLRSVGVARKGARVPA 612
           PY+ Y P         F +    GE+ ++H L S+GV+ KG  V A
Sbjct: 157 PYHAYSPSGSAQGNVVFVN---HGEERDYHALESIGVSVKGCVVLA 199


>At2g33010.1 68415.m04045 ubiquitin-associated (UBA)/TS-N
           domain-containing protein contains Pfam profile PF00627:
           UBA/TS-N domain
          Length = 649

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 345 STPTKTKLNLFLTSGRSLTPRTIPFGMPNT-NTLRNSL 455
           + PT   L ++L  G S+TP  IPF    T   +RN++
Sbjct: 565 AAPTTITLTIYLDDGGSVTPVYIPFRSDQTVRDIRNAI 602


>At4g14096.1 68417.m02176 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 468

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 324 TWMISSVSTPTKTKLNLFLTSGRSLTPRTIPFGMPN 431
           TW  +SVS PT  +L  F T  R   P+++    PN
Sbjct: 199 TWDFASVSVPTLKRLT-FSTQVRDEFPKSVSIDTPN 233


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,237,147
Number of Sequences: 28952
Number of extensions: 366201
Number of successful extensions: 1099
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)