Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40145
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    31   0.21 
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    27   2.0  
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    26   6.0  

>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +3

Query: 45  QEAQRAGIDSGFTPRP*SNSGTFGHDTQQSALQPEDITQVHQGS 176
           QE Q+  + +G T  P +N+ +F HD   +  Q  D +Q HQG+
Sbjct: 180 QEIQKNSLHTGNTSHPYANA-SFPHDPANAMGQQIDSSQFHQGA 222


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 297 GCNISKFTNSFHEAPCKRSNFFLLLRSV 380
           GC +   +  F E P  R+ FF LLR++
Sbjct: 829 GCTLEMISKDFSEYPEHRAAFFQLLRAI 856



 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +1

Query: 76  ASLLAHSRTPEHSDTIHNNLHYNLKI*HRSTREACHVCMAAWSHFSCRFFK 228
           +S L     PE+ + + N   Y L I   + RE   +C+  WS    + ++
Sbjct: 320 SSHLRPLENPENQEVLLNAHSYLLNISRINEREIFKICLEYWSKLVAQLYE 370


>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = -2

Query: 322 FVNFEILHPPRITPLAFDTCHLCICQTEPFTV*RTDK 212
           F  F    PP  TP   D  + C C+ +   + R  K
Sbjct: 267 FAEFASSSPPTFTPDVMDVINKCFCKNDTVDIIRALK 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,855,736
Number of Sequences: 5004
Number of extensions: 57524
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)