Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40145
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0532 - 34562151-34562225,34562958-34563161                       29   4.8  
04_03_0189 + 12444797-12444976,12445057-12445204,12445574-124458...    28   6.3  

>03_06_0532 - 34562151-34562225,34562958-34563161
          Length = 92

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 127 NNLHYNLKI*HRSTREACHVCMAAWSHFSC 216
           N L   L+  H     +CH+C A  S+FSC
Sbjct: 61  NQLKMKLQGWHAQMMASCHICSADASNFSC 90


>04_03_0189 +
           12444797-12444976,12445057-12445204,12445574-12445874,
           12445930-12446144,12446145-12446282,12446414-12446605,
           12446740-12446786
          Length = 406

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 178 RLPWWTCVISSGCSADCCVSCP 113
           +LP WTCV  +GC  +  +  P
Sbjct: 317 KLPAWTCVAETGCEIEVSIDGP 338


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,791,441
Number of Sequences: 37544
Number of extensions: 427174
Number of successful extensions: 1079
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)