Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40145
         (704 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49725| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.69 
SB_25072| Best HMM Match : DUF728 (HMM E-Value=4.5)                    30   2.1  
SB_33766| Best HMM Match : DUF728 (HMM E-Value=4.5)                    30   2.1  
SB_13325| Best HMM Match : HEAT (HMM E-Value=0.34)                     29   3.7  
SB_24312| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_47865| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_11709| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_49725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 300 CNISKFTNSFHEAPCKRSNFFLLLRSVV 383
           C ++     F E P  R+NFFLLL++VV
Sbjct: 508 CTLNMINKDFEEFPEHRTNFFLLLQAVV 535


>SB_25072| Best HMM Match : DUF728 (HMM E-Value=4.5)
          Length = 169

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +1

Query: 577 HKRSYHQFVCQTLRFHQIIA-LTDQTSLLKLGP*IRFSFS 693
           +K+  +  VC+TL++ Q+I  + +QT  LK    ++ SF+
Sbjct: 33  NKKKLYALVCETLKYRQVIEDIFEQTKFLKCEKQLKHSFA 72


>SB_33766| Best HMM Match : DUF728 (HMM E-Value=4.5)
          Length = 209

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +1

Query: 577 HKRSYHQFVCQTLRFHQIIA-LTDQTSLLKLGP*IRFSFS 693
           +K+  +  VC+TL++ Q+I  + +QT  LK    ++ SF+
Sbjct: 33  NKKKLYALVCETLKYRQVIEDIFEQTKFLKCEKQLKHSFA 72


>SB_13325| Best HMM Match : HEAT (HMM E-Value=0.34)
          Length = 142

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 7   LMDLNYGSWEPLVKRLKEQESIV 75
           L+ L +  W PLV+RLK QE +V
Sbjct: 38  LLPLIHKLWPPLVRRLKHQEEVV 60


>SB_24312| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 787

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 94  SRTPEHSDTIHNNLHYNLKI*HRSTREACHVCMAAWSHFSCRFFK 228
           +R P   +T+H  +  ++K  +RS  E+   C A   H  CR F+
Sbjct: 585 TRAPNQFETVHMPMMSDVKRNYRSVSESDTSCSAFLIHKVCRIFE 629


>SB_47865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1273

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 679 ESTGQVLTNLFDPLKLLSDENVKFDKQTGGRTSCESARV 563
           E TG+VL  +    ++  DENV FD++    T  ES+ V
Sbjct: 627 EETGKVLPAVDSKPRVAFDENVTFDERKPSVTQSESSAV 665


>SB_11709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -2

Query: 304 LHPPRITPLAFDTCHLCICQTEPFTV*RTDKRSETRRPCRRGRLP 170
           L  PR+ P     C    C  +   V  T +R   +RP RR RLP
Sbjct: 72  LESPRLLPRVDTACQCRWCSHDVLRV--TPRRLAIKRPQRRDRLP 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,343,130
Number of Sequences: 59808
Number of extensions: 479943
Number of successful extensions: 1096
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)