Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40145
(704 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical... 29 3.2
AF067612-4|AAM98010.1| 749|Caenorhabditis elegans Egg laying de... 29 3.2
AF067612-3|AAU05567.1| 743|Caenorhabditis elegans Egg laying de... 29 3.2
AF067612-2|AAD36953.1| 737|Caenorhabditis elegans Egg laying de... 29 3.2
AF067612-1|AAD36954.1| 780|Caenorhabditis elegans Egg laying de... 29 3.2
Z81086-3|CAD56586.1| 711|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 27 9.9
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 27 9.9
J05067-1|AAB59179.1| 313|Caenorhabditis elegans clb-2 protein. 27 9.9
>AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical
protein Y75B8A.13 protein.
Length = 1420
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 36 AAGQEAQRAGIDSGF--TPRP*SNSGTFGHDTQQSALQPEDITQ 161
AAGQEAQR DS F T S +G SA +P+DI Q
Sbjct: 1277 AAGQEAQRPEQDSRFPETSSMPSGAGEQEDQASGSAPEPDDILQ 1320
>AF067612-4|AAM98010.1| 749|Caenorhabditis elegans Egg laying
defective protein 4,isoform c protein.
Length = 749
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 45 QEAQRAGIDSGFTPRP*SNSGTFGHDTQQSALQPEDITQ 161
Q+AQ A G P P + G+D QQ A+ P D Q
Sbjct: 89 QKAQSAASPGGQPPSPSPRTDQLGNDLQQKAVLPADGVQ 127
>AF067612-3|AAU05567.1| 743|Caenorhabditis elegans Egg laying
defective protein 4,isoform e protein.
Length = 743
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 45 QEAQRAGIDSGFTPRP*SNSGTFGHDTQQSALQPEDITQ 161
Q+AQ A G P P + G+D QQ A+ P D Q
Sbjct: 83 QKAQSAASPGGQPPSPSPRTDQLGNDLQQKAVLPADGVQ 121
>AF067612-2|AAD36953.1| 737|Caenorhabditis elegans Egg laying
defective protein 4,isoform b protein.
Length = 737
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 45 QEAQRAGIDSGFTPRP*SNSGTFGHDTQQSALQPEDITQ 161
Q+AQ A G P P + G+D QQ A+ P D Q
Sbjct: 77 QKAQSAASPGGQPPSPSPRTDQLGNDLQQKAVLPADGVQ 115
>AF067612-1|AAD36954.1| 780|Caenorhabditis elegans Egg laying
defective protein 4,isoform a protein.
Length = 780
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 45 QEAQRAGIDSGFTPRP*SNSGTFGHDTQQSALQPEDITQ 161
Q+AQ A G P P + G+D QQ A+ P D Q
Sbjct: 120 QKAQSAASPGGQPPSPSPRTDQLGNDLQQKAVLPADGVQ 158
>Z81086-3|CAD56586.1| 711|Caenorhabditis elegans Hypothetical
protein F53B6.2b protein.
Length = 711
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -2
Query: 211 RSETRRPCRRGRLPWWTCVISSGCSADCCVS 119
R RPC R P W S CS+ CVS
Sbjct: 526 RPPETRPCHREDCPRWEASQWSECSSQRCVS 556
>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical
protein F53B6.2a protein.
Length = 1045
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -2
Query: 211 RSETRRPCRRGRLPWWTCVISSGCSADCCVS 119
R RPC R P W S CS+ CVS
Sbjct: 860 RPPETRPCHREDCPRWEASQWSECSSQRCVS 890
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +2
Query: 161 GPPGKPATSAWP--PGLTSLVGSSNCEGFR 244
G PG P T +P PGL+ + G +GF+
Sbjct: 1220 GYPGAPGTDGYPGPPGLSGMPGHGGDQGFQ 1249
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +2
Query: 161 GPPGKPATSAWP--PGLTSLVGSSNCEGFR 244
G PG P T +P PGL+ + G +GF+
Sbjct: 1477 GYPGAPGTDGYPGPPGLSGMPGHGGDQGFQ 1506
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +2
Query: 161 GPPGKPATSAWP--PGLTSLVGSSNCEGFR 244
G PG P T +P PGL+ + G +GF+
Sbjct: 1476 GYPGAPGTDGYPGPPGLSGMPGHGGDQGFQ 1505
>J05067-1|AAB59179.1| 313|Caenorhabditis elegans clb-2 protein.
Length = 313
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +2
Query: 161 GPPGKPATSAWP--PGLTSLVGSSNCEGFR 244
G PG P T +P PGL+ + G +GF+
Sbjct: 31 GYPGAPGTDGYPGPPGLSGMPGHGGDQGFQ 60
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,314,094
Number of Sequences: 27780
Number of extensions: 350391
Number of successful extensions: 857
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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