BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV40145 (704 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical... 29 3.2 AF067612-4|AAM98010.1| 749|Caenorhabditis elegans Egg laying de... 29 3.2 AF067612-3|AAU05567.1| 743|Caenorhabditis elegans Egg laying de... 29 3.2 AF067612-2|AAD36953.1| 737|Caenorhabditis elegans Egg laying de... 29 3.2 AF067612-1|AAD36954.1| 780|Caenorhabditis elegans Egg laying de... 29 3.2 Z81086-3|CAD56586.1| 711|Caenorhabditis elegans Hypothetical pr... 27 9.9 Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr... 27 9.9 Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 27 9.9 Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 27 9.9 X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 27 9.9 J05067-1|AAB59179.1| 313|Caenorhabditis elegans clb-2 protein. 27 9.9 >AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical protein Y75B8A.13 protein. Length = 1420 Score = 29.1 bits (62), Expect = 3.2 Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Frame = +3 Query: 36 AAGQEAQRAGIDSGF--TPRP*SNSGTFGHDTQQSALQPEDITQ 161 AAGQEAQR DS F T S +G SA +P+DI Q Sbjct: 1277 AAGQEAQRPEQDSRFPETSSMPSGAGEQEDQASGSAPEPDDILQ 1320 >AF067612-4|AAM98010.1| 749|Caenorhabditis elegans Egg laying defective protein 4,isoform c protein. Length = 749 Score = 29.1 bits (62), Expect = 3.2 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = +3 Query: 45 QEAQRAGIDSGFTPRP*SNSGTFGHDTQQSALQPEDITQ 161 Q+AQ A G P P + G+D QQ A+ P D Q Sbjct: 89 QKAQSAASPGGQPPSPSPRTDQLGNDLQQKAVLPADGVQ 127 >AF067612-3|AAU05567.1| 743|Caenorhabditis elegans Egg laying defective protein 4,isoform e protein. Length = 743 Score = 29.1 bits (62), Expect = 3.2 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = +3 Query: 45 QEAQRAGIDSGFTPRP*SNSGTFGHDTQQSALQPEDITQ 161 Q+AQ A G P P + G+D QQ A+ P D Q Sbjct: 83 QKAQSAASPGGQPPSPSPRTDQLGNDLQQKAVLPADGVQ 121 >AF067612-2|AAD36953.1| 737|Caenorhabditis elegans Egg laying defective protein 4,isoform b protein. Length = 737 Score = 29.1 bits (62), Expect = 3.2 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = +3 Query: 45 QEAQRAGIDSGFTPRP*SNSGTFGHDTQQSALQPEDITQ 161 Q+AQ A G P P + G+D QQ A+ P D Q Sbjct: 77 QKAQSAASPGGQPPSPSPRTDQLGNDLQQKAVLPADGVQ 115 >AF067612-1|AAD36954.1| 780|Caenorhabditis elegans Egg laying defective protein 4,isoform a protein. Length = 780 Score = 29.1 bits (62), Expect = 3.2 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = +3 Query: 45 QEAQRAGIDSGFTPRP*SNSGTFGHDTQQSALQPEDITQ 161 Q+AQ A G P P + G+D QQ A+ P D Q Sbjct: 120 QKAQSAASPGGQPPSPSPRTDQLGNDLQQKAVLPADGVQ 158 >Z81086-3|CAD56586.1| 711|Caenorhabditis elegans Hypothetical protein F53B6.2b protein. Length = 711 Score = 27.5 bits (58), Expect = 9.9 Identities = 13/31 (41%), Positives = 14/31 (45%) Frame = -2 Query: 211 RSETRRPCRRGRLPWWTCVISSGCSADCCVS 119 R RPC R P W S CS+ CVS Sbjct: 526 RPPETRPCHREDCPRWEASQWSECSSQRCVS 556 >Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical protein F53B6.2a protein. Length = 1045 Score = 27.5 bits (58), Expect = 9.9 Identities = 13/31 (41%), Positives = 14/31 (45%) Frame = -2 Query: 211 RSETRRPCRRGRLPWWTCVISSGCSADCCVS 119 R RPC R P W S CS+ CVS Sbjct: 860 RPPETRPCHREDCPRWEASQWSECSSQRCVS 890 >Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein K04H4.1b protein. Length = 1502 Score = 27.5 bits (58), Expect = 9.9 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%) Frame = +2 Query: 161 GPPGKPATSAWP--PGLTSLVGSSNCEGFR 244 G PG P T +P PGL+ + G +GF+ Sbjct: 1220 GYPGAPGTDGYPGPPGLSGMPGHGGDQGFQ 1249 >Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein K04H4.1a protein. Length = 1759 Score = 27.5 bits (58), Expect = 9.9 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%) Frame = +2 Query: 161 GPPGKPATSAWP--PGLTSLVGSSNCEGFR 244 G PG P T +P PGL+ + G +GF+ Sbjct: 1477 GYPGAPGTDGYPGPPGLSGMPGHGGDQGFQ 1506 >X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen protein. Length = 1758 Score = 27.5 bits (58), Expect = 9.9 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%) Frame = +2 Query: 161 GPPGKPATSAWP--PGLTSLVGSSNCEGFR 244 G PG P T +P PGL+ + G +GF+ Sbjct: 1476 GYPGAPGTDGYPGPPGLSGMPGHGGDQGFQ 1505 >J05067-1|AAB59179.1| 313|Caenorhabditis elegans clb-2 protein. Length = 313 Score = 27.5 bits (58), Expect = 9.9 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%) Frame = +2 Query: 161 GPPGKPATSAWP--PGLTSLVGSSNCEGFR 244 G PG P T +P PGL+ + G +GF+ Sbjct: 31 GYPGAPGTDGYPGPPGLSGMPGHGGDQGFQ 60 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,314,094 Number of Sequences: 27780 Number of extensions: 350391 Number of successful extensions: 857 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 820 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 857 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1634564590 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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