Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40145
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.1  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.1  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   4.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.6  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +3

Query: 285 VIRGGCNISKFTNSFHEAPCKRSNFFLLLRSVVAVTAHLVLS 410
           +++ GC I++         CK ++  L +R  + +T   +LS
Sbjct: 227 IVQTGCTITRVIPQVCSGNCKLNDILLTVRPHLELTFENILS 268


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +3

Query: 285 VIRGGCNISKFTNSFHEAPCKRSNFFLLLRSVVAVTAHLVLS 410
           +++ GC I++         CK ++  L +R  + +T   +LS
Sbjct: 227 IVQTGCTITRVIPQVCSGNCKLNDILLTVRPHLELTFENILS 268


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -2

Query: 430 VYGLQ*PLNTRWAVTATTDLSNKKKFDRLQGAS*KLFVNFEILHPPRITPL 278
           V G Q     R  VT    + +  K+D L+  +    +N+E L   + TPL
Sbjct: 94  VAGAQRGNEQRCTVTMHGTVQSYDKYDLLENVNNAARINWEYLDKYKPTPL 144


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 266 VSLVHLSNGTLHSLKNR 216
           V L+H  N T H+++N+
Sbjct: 372 VQLIHAGNYTCHAVRNQ 388


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 13  DLNYGSWEPL 42
           DL Y +WEP+
Sbjct: 269 DLKYNTWEPI 278


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,057
Number of Sequences: 438
Number of extensions: 4159
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)