Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40145
         (704 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains...    28   6.9  
At2g02010.1 68415.m00136 glutamate decarboxylase, putative stron...    28   6.9  

>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
           ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
          Length = 1340

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +1

Query: 25  GSWEPL--VKRLKEQESIVASLLAHSRTPEHSDTIHNNLHYN 144
           GSW+P   +    +Q S++ ++L HS+   H D + N  H+N
Sbjct: 618 GSWDPTDGMDPSVDQSSLIQTMLRHSKDKLHLD-LSNCRHWN 658


>At2g02010.1 68415.m00136 glutamate decarboxylase, putative strong
           similarity to glutamate decarboxylase isozyme 3
           [Nicotiana tabacum] GI:13752462
          Length = 493

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 670 GQVLTNLFDPLKLLSDENVKFDKQTGGRT 584
           G  LT  F+ +KLL+D  V+ +KQTG  T
Sbjct: 211 GSTLTGEFEDVKLLNDLLVEKNKQTGWDT 239


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,382,115
Number of Sequences: 28952
Number of extensions: 324559
Number of successful extensions: 738
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)