Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40143
         (846 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9NJ15 Cluster: Proprotein convertase subtilisin/kexin ...    36   1.7  
UniRef50_Q54ET1 Cluster: Putative uncharacterized protein; n=1; ...    35   2.2  
UniRef50_Q22NN4 Cluster: Hypothetical repeat containing protein;...    33   6.8  
UniRef50_Q03823 Cluster: Uncharacterized protein YMR160W; n=2; S...    33   6.8  

>UniRef50_Q9NJ15 Cluster: Proprotein convertase subtilisin/kexin type
            5 precursor; n=3; Branchiostoma californiense|Rep:
            Proprotein convertase subtilisin/kexin type 5 precursor -
            Branchiostoma californiensis (California lancelet)
            (Amphioxus)
          Length = 1696

 Score = 35.5 bits (78), Expect = 1.7
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -1

Query: 369  ISRFICIIKVKLVILSFRL*KIRTKHILCWIHSYQCGCLTSRFESFS 229
            ++ FIC++ V L  + F + + R+   LCW H YQ    T+R+E  +
Sbjct: 1621 VATFICVVIVVLFFVVFGMLQARSNGRLCWAHKYQ-QVPTTRYEKMN 1666


>UniRef50_Q54ET1 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 938

 Score = 35.1 bits (77), Expect = 2.2
 Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 3/110 (2%)
 Frame = -3

Query: 571 NRFKIFKFDKQVNVNQLFFRCVF-LHIQPQDNTFIGVKNYYAFPNHNHRWI*ESFYSNTL 395
           N   I K+   + +N     C +  + +  +N  I   NYY   NHNH  +    Y  T+
Sbjct: 112 NNLNINKYTHNIVLNDKQINCTYDRNCKVHNNNGINNNNYYRH-NHNHNQVDNYDYRKTI 170

Query: 394 MKLLLIRKNFKIYLYY*SKARNFELSTVKNSYKTYIV--LDSFVSMRMSD 251
             L+ I K+ +  L   S+  N  +   K+  + +++   D F+S   S+
Sbjct: 171 NPLVSISKDLQREL---SETFNVSMELAKSGAENHLIDDEDGFISPSTSE 217


>UniRef50_Q22NN4 Cluster: Hypothetical repeat containing protein; n=1;
            Tetrahymena thermophila SB210|Rep: Hypothetical repeat
            containing protein - Tetrahymena thermophila SB210
          Length = 3149

 Score = 33.5 bits (73), Expect = 6.8
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +3

Query: 84   FFFFRLSRTQQSALLVPSIVYRYIQLLFFYNNI 182
            +F +++S  QQS +   S +Y+Y QL  FY NI
Sbjct: 1207 YFLYQVSPNQQSCIKCNSDIYQYTQLQSFYQNI 1239


>UniRef50_Q03823 Cluster: Uncharacterized protein YMR160W; n=2;
           Saccharomyces cerevisiae|Rep: Uncharacterized protein
           YMR160W - Saccharomyces cerevisiae (Baker's yeast)
          Length = 816

 Score = 33.5 bits (73), Expect = 6.8
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 505 FLHIQPQDNTFIG-VKNYYAFPNHNHRWI 422
           FLH+QP     +  +KNYY FPN  H ++
Sbjct: 206 FLHVQPLRTKVLNTIKNYYNFPNEQHLYL 234


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 814,346,506
Number of Sequences: 1657284
Number of extensions: 16279431
Number of successful extensions: 38661
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 37012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38639
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 74193458591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)