Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40143
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    27   2.5  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    27   2.5  
SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi...    27   3.3  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   5.8  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    26   5.8  
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma...    26   5.8  
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    26   5.8  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    26   7.7  

>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 54  FLVPSVVCHVFFFFRLSRT-QQSALLVPSIVYRYIQLLFFYNNI 182
           F     +CH + FFR S T  +  +L    +Y+   ++F + NI
Sbjct: 511 FAAAYAICHYYRFFRTSHTISRKFMLSIEFIYQLATIVFGWFNI 554


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 322  LSTVKNSYKTYIVLDSFVSMRMSDKPI*IVFAATFVNRPSADR 194
            + T  N+ KTY  L + V   ++DK + +V A   V R + DR
Sbjct: 1143 MGTTHNNKKTYPRLATVVGYVLTDKIMEVVKAILIVQRDNGDR 1185


>SPAC1851.02 |||1-acylglycerol-3-phosphate
          O-acyltransferase|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 279

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 20 FTKVTFVMSLEIFSSVCGLSRFF 88
          F K T + ++ +F  +CG++RFF
Sbjct: 3  FIKSTLLATVTVFVGLCGINRFF 25


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = -1

Query: 375 EKISRFICIIKVKLVILSFRL*K---IRTKHILCWIHSYQCGCLTSRFESFSRQPSSIAR 205
           EK+  F C+I   L +  FR+ K   I    +  W HS + GC  +  +     P  +  
Sbjct: 286 EKLKHFACMIIAMLDVDGFRIDKATQITVDFLASWAHSVR-GCAATFNKKNFFIPGEVT- 343

Query: 204 PPTAYVLIYY 175
             ++Y  IYY
Sbjct: 344 GSSSYGSIYY 353


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 560 FKPIFSIEFSSWLVFLYNQKLS 625
           +KP+F  EFS+W  F +   +S
Sbjct: 53  YKPVFKREFSTWATFSFAFSIS 74


>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -1

Query: 819 NGTGFYPKHFPRITLVLFGWFGLLLKLVFTIFNPTKKLRFFFKHNDS 679
           N  G  PK F    LVL  WF +     F  F  +K+L  F + +D+
Sbjct: 148 NADGSVPKDFS-FELVLKEWFPMHASTEFRCFVKSKRLIAFCQRDDN 193


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +1

Query: 655 MSRIFFICTVVMFKKEP*LFGWVENCK 735
           ++R+   CT+ +++K P L GW+++ K
Sbjct: 19  LARLIPKCTIDLYEKGPRLGGWLQSVK 45


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = +3

Query: 612 IKNYRLST*LIWAVNV--ENIFYLY 680
           +K YRLS   +WA+++  E IF +Y
Sbjct: 121 LKAYRLSVLYVWAIDIVFETIFIVY 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,563,712
Number of Sequences: 5004
Number of extensions: 75579
Number of successful extensions: 210
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)