Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40143
         (846 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125954-1|AAK68174.1|  340|Caenorhabditis elegans Serpentine re...    28   7.3  
AC006769-2|AAF60583.2|  340|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z93386-3|CAB07648.1|  230|Caenorhabditis elegans Hypothetical pr...    28   9.6  
Z81056-9|CAB02908.2|  292|Caenorhabditis elegans Hypothetical pr...    28   9.6  

>AF125954-1|AAK68174.1|  340|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 60 protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 161 QLYISVNY*RHQQRRLLCSRKTKKKKNVTNHRRN 60
           Q+Y  V Y R  +R L CSR  + + N  + RRN
Sbjct: 287 QIYFIVPYRRAAKRILTCSRSERIENNENSLRRN 320


>AC006769-2|AAF60583.2|  340|Caenorhabditis elegans Hypothetical
           protein Y45G12C.7 protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 161 QLYISVNY*RHQQRRLLCSRKTKKKKNVTNHRRN 60
           Q+Y  V Y R  +R L CSR  + + N  + RRN
Sbjct: 287 QIYFIVPYRRAAKRILTCSRSERIENNENSLRRN 320


>Z93386-3|CAB07648.1|  230|Caenorhabditis elegans Hypothetical
           protein R11H6.4 protein.
          Length = 230

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 20  FTKVTFVMSLEIFSSVCGLSRFFFFSSFENTAVCVVGAFNSL 145
           F ++  V  +  + SV    RFFFF S  NT+  V+  F S+
Sbjct: 49  FCRLLVVSIILFYQSVTHPHRFFFFLSSPNTSFSVLFRFYSI 90


>Z81056-9|CAB02908.2|  292|Caenorhabditis elegans Hypothetical
           protein F09F3.11 protein.
          Length = 292

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 41  MSLEIFSSVCGLSRFFFFSSFENTAVCVVGAFNSLPIYTIVIF 169
           MSL  F+++   +R    S F  T + ++GAF    +YT + F
Sbjct: 87  MSLNRFAALYFATRHLRISDFPITGIAIIGAFAVAILYTCLGF 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,552,750
Number of Sequences: 27780
Number of extensions: 414711
Number of successful extensions: 1042
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)