Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40143
         (846 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-...    33   0.18 
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila...    31   0.73 
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila...    31   0.73 
At5g45595.1 68418.m05602 hypothetical protein                          28   6.8  

>At2g29080.1 68415.m03535 FtsH protease, putative similar to
           AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
           contains Pfam profiles PF01434: Peptidase family M41,
           PF00004: ATPase AAA family
          Length = 809

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 31/120 (25%), Positives = 45/120 (37%), Gaps = 1/120 (0%)
 Frame = -1

Query: 846 KTGGISPVGNGTGFYPKHFPRITLVLFGWFGLLLKLVFTIF-NPTKKLRFFFKHNDSTNK 670
           +   ++ V  G GF  +HF  +        GL+   +  +F NP  +LR FF       K
Sbjct: 38  EAASVNEVEGGLGFIRRHFASLA----SRKGLVNNDLIGVFANP--RLRRFFSDEAPKKK 91

Query: 669 KYSRH*LPKSTMYLNDSF*LYKKTSHEENSIEKIGLKFSNLINKSMSINFFLGAFFCTYS 490
            Y  +  PK             K   E+N  E +G  F N     +     L  FF T+S
Sbjct: 92  NYENY-FPKDKQEPKSDQKSEHKEGSEKNENENVGDMFMNRFQNLLIPLLALAVFFSTFS 150


>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicases
          Length = 505

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +1

Query: 718 WVENCKNQFQQK-SKPTKKDQCNPWKMFWVKTGSIPHGGNSPG 843
           + +N + QFQQ  S+P +  Q    +  W++ G IP GGNS G
Sbjct: 44  YAQNHQQQFQQAPSQPHQYQQQQQQQQQWLRRGQIP-GGNSNG 85


>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicases
          Length = 505

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +1

Query: 718 WVENCKNQFQQK-SKPTKKDQCNPWKMFWVKTGSIPHGGNSPG 843
           + +N + QFQQ  S+P +  Q    +  W++ G IP GGNS G
Sbjct: 44  YAQNHQQQFQQAPSQPHQYQQQQQQQQQWLRRGQIP-GGNSNG 85


>At5g45595.1 68418.m05602 hypothetical protein
          Length = 143

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -3

Query: 823 GEWNRFLPKTFSKDYIGPFWLVWTFAEIGFYN 728
           G WNR +P T  + +     L W +  +G  N
Sbjct: 2   GIWNRIVPPTLQRPFYTQTLLEWIYGNVGSQN 33


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,765,299
Number of Sequences: 28952
Number of extensions: 360524
Number of successful extensions: 883
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)