Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40142
         (753 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    24   1.5  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    23   3.5  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    23   3.5  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    22   6.0  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   8.0  

>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 644 LPARTHKRSPPVPPDIP 594
           L   TH   PPVPP+ P
Sbjct: 685 LQVGTHADLPPVPPNFP 701


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = -1

Query: 714 PRPFTTRKRIAASPVENRESRVVPTRADSQEVTTSTTRHPFQYLLMSNYL 565
           P  F  +  I++ P   R  ++          T   T HPFQ +L+ + L
Sbjct: 102 PHRFRLKFNISSIP---RHEKLTAAEIKLTRETAKNTSHPFQRVLVHDIL 148


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 675 PVENRESRVVPTRADSQEVTTSTTRHP 595
           P +  ES   PT+A  Q   +STT+ P
Sbjct: 403 PTQTTESE--PTQASEQPTESSTTQKP 427


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 111 QKFKSSVNKVFYGIVKITPHW 49
           QK K  V+KVF  ++   P+W
Sbjct: 75  QKQKEDVHKVFQHLMIHRPNW 95


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 319 CVCLFQNDSQCCKCQLKQCFV 257
           CV   +N + C  C+L++C +
Sbjct: 48  CVINKKNRTACKACRLRKCLL 68


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,387
Number of Sequences: 336
Number of extensions: 3670
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)