Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40142
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    27   2.9  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    27   3.8  
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit...    26   5.0  
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    25   8.8  

>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +2

Query: 281 FTALRVVLK*THTQIYLLK--NIIFIY*LKKIHK 376
           FTALR++ K T  Q+YL++  +   IY +KKI K
Sbjct: 302 FTALRLIGKGTFGQVYLVRKNDTNRIYAMKKISK 335


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 662 GKAGWYLPARTHKRSPPVPPDIPFSTY 582
           G A  YL      RSPP+ P+ PF+++
Sbjct: 163 GDAPSYLAPSKPNRSPPLKPEDPFASF 189


>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
           Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 354

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 214 VNSKLIKQIHATTLK*KFSFKIVLLNKDHRG-SCISK 107
           +NSK+ KQI   + K K  +K++LL     G S ISK
Sbjct: 16  LNSKIEKQIENASKKDKKIYKVLLLGASDSGKSTISK 52


>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
          Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 37 RHLAPVRRNFYYPIE 81
          RHL+ ++RNFYY ++
Sbjct: 53 RHLSALKRNFYYTMD 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,909,969
Number of Sequences: 5004
Number of extensions: 57926
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)