Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40142
         (753 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)                   29   5.4  
SB_37175| Best HMM Match : GvpH (HMM E-Value=2.5)                      29   5.4  
SB_47868| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_9970| Best HMM Match : zf-C4 (HMM E-Value=9.4e-38)                  28   7.1  
SB_35523| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   9.4  

>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
          Length = 3037

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -1

Query: 717  LPRPFTTRKRIAASPVENRESRVVPTRADSQEVTTSTTRHPFQYLLMSNY 568
            L  P  T  ++  SP  + E+   PT ADS  V TS    P   ++  +Y
Sbjct: 1597 LSDPKITTFKVPESPTSSIEATTAPTSADSPTVATSPIDSPTVPVVEQSY 1646


>SB_37175| Best HMM Match : GvpH (HMM E-Value=2.5)
          Length = 340

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -1

Query: 717 LPRPFTTRKRIAASPVENRESRVVPTRADSQEVTTSTTRHPFQYLLMSNY 568
           L  P  T  ++  SP  + E+   PT ADS  V TS    P   ++  +Y
Sbjct: 27  LSDPKITTFKVPESPTSSIEATTAPTSADSPTVATSPIDSPTVPVVEQSY 76


>SB_47868| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = -2

Query: 659 KAGWYLPARTHKRSPPVPPDIPFSTYLCQIT*PIFFFKFISFRIEYLITVWYNSKLNYK 483
           + G Y+ +R    SPP PP+ P           +  F  +S  + Y +  W N  ++Y+
Sbjct: 7   RPGLYINSRDELSSPPPPPE-PMYDLGPLAALRVVLFLLLSEHMGYRLLAWNNINISYR 64


>SB_9970| Best HMM Match : zf-C4 (HMM E-Value=9.4e-38)
          Length = 259

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 10/27 (37%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -3

Query: 295 SQCCKCQLKQCF-VKLNQIINWISLVI 218
           +QC  C+LK+CF V +N+ + ++ L +
Sbjct: 61  NQCRSCRLKKCFDVSMNKDVQFVDLAV 87


>SB_35523| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1410

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
 Frame = -2

Query: 641  PARTHKRSPPVPPDI--PFSTYLCQIT*PIFF---FKFISFRIEYLITVWYNSKLNYKEN 477
            P+ T +++P  PP I  P +T    +  P F    F+F +FR E++  ++ N K  Y ++
Sbjct: 992  PSITQRKTPLTPPFIYHPETTTHLLLIVPFFCVEGFRFSTFRGEHVDIIYGNVKHAYFQD 1051

Query: 476  D 474
            D
Sbjct: 1052 D 1052


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,951,944
Number of Sequences: 59808
Number of extensions: 418367
Number of successful extensions: 833
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)