Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40142
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-...    28   8.2  
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    28   8.2  
AY204191-1|AAO39195.1|  357|Caenorhabditis elegans nuclear recep...    28   8.2  

>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform b protein.
          Length = 1169

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 644 LPARTHKRSPPVPPDIPFSTYLCQIT 567
           LP RT     P+PP +P S ++ Q+T
Sbjct: 578 LPPRTPIPQVPLPPQLPISVHVPQVT 603


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 644 LPARTHKRSPPVPPDIPFSTYLCQIT 567
           LP RT     P+PP +P S ++ Q+T
Sbjct: 675 LPPRTPIPQVPLPPQLPISVHVPQVT 700


>AY204191-1|AAO39195.1|  357|Caenorhabditis elegans nuclear receptor
           NHR-107 protein.
          Length = 357

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
 Frame = -3

Query: 322 LCVCLFQNDSQC-CK-CQLKQC 263
           LC CL + +SQC C+ C++K+C
Sbjct: 40  LCKCLSKKESQCPCRLCRMKKC 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,051,899
Number of Sequences: 27780
Number of extensions: 340510
Number of successful extensions: 751
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)