Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40142
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   5.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.4  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    21   9.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.4  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   9.4  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 66  LLSHRRLCLLKI*IFEMHD 122
           +L  +++C  KI +F +HD
Sbjct: 141 ILGEKQICRPKIHVFSLHD 159


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 629  HKRSPPVPPDIPFSTYLCQ 573
            H+ + P+PP +P     CQ
Sbjct: 1104 HEENAPLPPALPPQVVSCQ 1122



 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 348 LYINLKKYTNTALEHSIEPVQNVNLFI 428
           L+  L+KYT +    SI      NL++
Sbjct: 236 LFCGLQKYTRSFAHQSINKEARSNLYL 262


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 319 CVCLFQNDSQCCKCQLKQC 263
           C  L  N ++C  C+LK+C
Sbjct: 61  CSILRINRNRCQYCRLKKC 79


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 319 CVCLFQNDSQCCKCQLKQC 263
           C  L  N ++C  C+LK+C
Sbjct: 110 CSILRINRNRCQYCRLKKC 128


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 348 LYINLKKYTNTALEHSIEPVQNVNLFI 428
           L+  L+KYT +    SI      NL++
Sbjct: 231 LFCGLQKYTRSFAHQSINKEARSNLYL 257


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,277
Number of Sequences: 438
Number of extensions: 4119
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)