Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40141
         (924 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po...    29   0.70 
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    28   2.1  
SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual             26   8.6  

>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 380

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 715 PNPVDWPWNDSRNIALYWEVIP 780
           P P DWP+ D+R + L  EV+P
Sbjct: 270 PIPEDWPYEDARRLFLDAEVLP 291


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -2

Query: 809 LPKQSLWTFSGITSQYKAIFRESFHGQS 726
           LPK S+W  +G+TS    +FR SFHG S
Sbjct: 288 LPK-SVWQVNGLTS----LFRASFHGYS 310


>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 484

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 305 CSSTNIMLW*RVF*KSW*FVFKLYVVYDIS*TPVSKIKSYISDHNA 168
           CSS   ++  R   KSW  VF   V+Y    TP + + +  S + +
Sbjct: 373 CSSIGSLI--RQLNKSWEVVFLTSVIYSCCKTPAASVSNTFSSYKS 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,975,587
Number of Sequences: 5004
Number of extensions: 87851
Number of successful extensions: 232
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)