Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40141
         (924 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22728| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.75 
SB_28041| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_51978| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  

>SB_22728| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 31.9 bits (69), Expect = 0.75
 Identities = 22/53 (41%), Positives = 30/53 (56%)
 Frame = -2

Query: 488 YSFAVSGSSSDCIADPCDVVEDAPYVLLLEHFAGFLLSSLLEPSSDVSERFIM 330
           Y+   S S +  IAD  DV     + LLL H+ G  LSSL+  SS + +RFI+
Sbjct: 9   YARVHSQSCTVVIADDTDV-----FALLLYHYLGEDLSSLMFISSPIQQRFIV 56


>SB_28041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 21/48 (43%), Positives = 28/48 (58%)
 Frame = -2

Query: 473 SGSSSDCIADPCDVVEDAPYVLLLEHFAGFLLSSLLEPSSDVSERFIM 330
           S S +  IAD  DV     + LLL H+ G  LSSL+  SS + +RFI+
Sbjct: 14  SQSCTVVIADDTDV-----FALLLYHYLGEDLSSLMFISSPIQQRFIV 56


>SB_51978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -3

Query: 241 NFMSFTTYHKHRSVKSKV-IFQITTQILTLCYLN-FIGQSSLHFLNSYFH 98
           +++  +  H H  +K+KV I  IT  I T    N  I  SSLH   SY H
Sbjct: 117 HYLRHSQLHHHPIIKNKVIIIFITILITTFVTANSIITPSSLHHEQSYHH 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,896,044
Number of Sequences: 59808
Number of extensions: 619509
Number of successful extensions: 1488
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1488
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2681370225
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)