Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40141
         (924 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-2595|AAF49568.2|  500|Drosophila melanogaster CG6117-PA...    29   6.8  
AE014296-2594|AAN11771.2|  583|Drosophila melanogaster CG6117-PB...    29   6.8  

>AE014296-2595|AAF49568.2|  500|Drosophila melanogaster CG6117-PA,
           isoform A protein.
          Length = 500

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +1

Query: 388 PAKCSRSNTYGASSTTS---HGSAIQSEDEPDTANEYHSN 498
           PA  SRS++   ++TTS   H + +  EDE D  NE   N
Sbjct: 100 PATNSRSSSTATTTTTSSADHDNDVDEEDEEDDENEGEGN 139


>AE014296-2594|AAN11771.2|  583|Drosophila melanogaster CG6117-PB,
           isoform B protein.
          Length = 583

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +1

Query: 388 PAKCSRSNTYGASSTTS---HGSAIQSEDEPDTANEYHSN 498
           PA  SRS++   ++TTS   H + +  EDE D  NE   N
Sbjct: 183 PATNSRSSSTATTTTTSSADHDNDVDEEDEEDDENEGEGN 222


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,022,041
Number of Sequences: 53049
Number of extensions: 917192
Number of successful extensions: 2730
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2723
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4546383066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)