Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40141
(924 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 25 0.97
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 24 1.7
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 3.0
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 23 5.2
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 23 5.2
AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex det... 22 6.8
AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 22 6.8
DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex det... 22 9.0
AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex det... 22 9.0
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 22 9.0
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 22 9.0
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 22 9.0
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 9.0
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 25.0 bits (52), Expect = 0.97
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 485 SFAVSGSSSDCIADPCDVVEDAPYVLLLEHFAGF 384
S ++S S + P +EDAP LL +F G+
Sbjct: 375 SSSISSSEENDFWQPKPTLEDAPQNSLLPNFVGY 408
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 24.2 bits (50), Expect = 1.7
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = -2
Query: 887 SNGLLVRPKVQNFTQGPLTXGLEPQKLPKQSLWTFSGITSQYKAIFR 747
S+ +L +P ++ +TQ + ++ Q T S +TS Y F+
Sbjct: 446 SSHILQQPSIRTYTQQQFPYVHDTLQIQPQEQLTLSKVTSNYHEEFQ 492
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 23.4 bits (48), Expect = 3.0
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -1
Query: 108 VISTFLA--YKHKRVHSHNIFNLCMLVLLFW 22
V+ST L Y H+ +H + +V L+W
Sbjct: 309 VVSTILILNYHHRNADTHEMSEWVKVVFLYW 339
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 22.6 bits (46), Expect = 5.2
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = +1
Query: 382 RKPAKCSRSNTYGASSTTSHGSAIQSEDE 468
R P RSNT S T ++S D+
Sbjct: 83 RSPGSRDRSNTSNTSKTVILSDKLESSDD 111
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 22.6 bits (46), Expect = 5.2
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 244 NTNYQLFQNTLYHNII 291
N NY+ + LY+NII
Sbjct: 326 NNNYKNYNKKLYYNII 341
>AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 22.2 bits (45), Expect = 6.8
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +1
Query: 382 RKPAKCSRSNTYGASSTTSHGSAIQSEDE 468
R P RSNT S T + ++S D+
Sbjct: 83 RSPDSRDRSNTSNTSKTVILSNKLESSDD 111
>AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein
protein.
Length = 352
Score = 22.2 bits (45), Expect = 6.8
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +2
Query: 413 HMVHLQLHHMDLQYNQKMNLIQQMNI 490
H +H Q HM Q Q + QQ ++
Sbjct: 170 HQMHTQHPHMQPQQGQHQSQAQQQHL 195
Score = 21.8 bits (44), Expect = 9.0
Identities = 10/38 (26%), Positives = 13/38 (34%)
Frame = +2
Query: 350 HQMKVPAVKKAENQRSAREAIHMVHLQLHHMDLQYNQK 463
HQM Q + HLQ H + Y Q+
Sbjct: 170 HQMHTQHPHMQPQQGQHQSQAQQQHLQAHEQHMMYQQQ 207
>DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 21.8 bits (44), Expect = 9.0
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +1
Query: 244 NTNYQLFQNTLYHNIIFV 297
N NY + LY+NI ++
Sbjct: 98 NNNYNNYNKKLYYNINYI 115
>AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 21.8 bits (44), Expect = 9.0
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = +1
Query: 382 RKPAKCSRSNTYGASSTTSHGSAIQSEDE 468
R P RSNT S T ++S D+
Sbjct: 83 RSPDSRDRSNTSNTSKTVILSDKLESSDD 111
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 9.0
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = +1
Query: 382 RKPAKCSRSNTYGASSTTSHGSAIQSEDE 468
R P RSNT S T ++S D+
Sbjct: 83 RSPDSRDRSNTSNTSKTVILSDKLESSDD 111
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 21.8 bits (44), Expect = 9.0
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +1
Query: 382 RKPAKCSRSNTYGASSTTSHGSAIQSEDE 468
R P RSNT S T + ++S D+
Sbjct: 83 RSPDSRDRSNTSNTSKTIILSNKLESSDD 111
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 21.8 bits (44), Expect = 9.0
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = +1
Query: 382 RKPAKCSRSNTYGASSTTSHGSAIQSEDE 468
R P RSNT S T ++S D+
Sbjct: 83 RSPDSRDRSNTSNTSKTVILSDKLESSDD 111
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 9.0
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +2
Query: 446 LQYNQKMNLIQQMNIIQTS 502
LQ ++N+IQQ +++QT+
Sbjct: 149 LQEQLQLNVIQQTHLLQTA 167
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 273,621
Number of Sequences: 438
Number of extensions: 6156
Number of successful extensions: 20
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30113811
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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