Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40141
         (924 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53570.2 68414.m06081 mitogen-activated protein kinase kinase...    29   3.3  
At1g53570.1 68414.m06080 mitogen-activated protein kinase kinase...    29   3.3  
At5g50390.1 68418.m06241 pentatricopeptide (PPR) repeat-containi...    29   5.8  
At2g46980.2 68415.m05869 expressed protein                             28   7.6  
At2g46980.1 68415.m05868 expressed protein                             28   7.6  
At2g28450.1 68415.m03456 zinc finger (CCCH-type) family protein ...    28   7.6  
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf...    28   7.6  

>At1g53570.2 68414.m06081 mitogen-activated protein kinase kinase
           kinase (MAPKKK), putative (MAP3Ka) identical to MEK
           kinase (MAP3Ka)[Arabidopsis thaliana]
           gi|4204912|gb|AAD10848
          Length = 608

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
 Frame = -3

Query: 283 YGKEYFERVGSLYLNFMSFTTYHK----HRSVKSKVIFQITTQILT-LCYLNFIGQSSLH 119
           YG E  E   S+YL ++S  + HK    + S    VI   T QIL  L YL+  G++++H
Sbjct: 280 YGSELSEETLSVYLEYVSGGSIHKLLKDYGSFTEPVIQNYTRQILAGLAYLH--GRNTVH 337


>At1g53570.1 68414.m06080 mitogen-activated protein kinase kinase
           kinase (MAPKKK), putative (MAP3Ka) identical to MEK
           kinase (MAP3Ka)[Arabidopsis thaliana]
           gi|4204912|gb|AAD10848
          Length = 609

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
 Frame = -3

Query: 283 YGKEYFERVGSLYLNFMSFTTYHK----HRSVKSKVIFQITTQILT-LCYLNFIGQSSLH 119
           YG E  E   S+YL ++S  + HK    + S    VI   T QIL  L YL+  G++++H
Sbjct: 280 YGSELSEETLSVYLEYVSGGSIHKLLKDYGSFTEPVIQNYTRQILAGLAYLH--GRNTVH 337


>At5g50390.1 68418.m06241 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 701

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/78 (23%), Positives = 35/78 (44%)
 Frame = -2

Query: 542 ICAIFYAGFSSFVLRFE*YSFAVSGSSSDCIADPCDVVEDAPYVLLLEHFAGFLLSSLLE 363
           +C  F   F  F +     SF V  S+ D + + C  ++    +  ++   GF++S+  E
Sbjct: 99  LCNRFREAFELFEILEIRCSFKVGVSTYDALVEACIRLKS---IRCVKRVYGFMMSNGFE 155

Query: 362 PSSDVSERFIMTPQVCGL 309
           P   +  R ++    CG+
Sbjct: 156 PEQYMMNRILLMHVKCGM 173


>At2g46980.2 68415.m05869 expressed protein
          Length = 516

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 394 KCSRSNTYGASSTTSHGSAIQSEDEPDTANEYHSNLSTNEEKP 522
           + S+SNT   S +T  G    S D+  ++++ H      ++KP
Sbjct: 352 EASKSNTPPRSESTETGKRSSSSDKKGSSHDLHPQSKARKQKP 394


>At2g46980.1 68415.m05868 expressed protein
          Length = 516

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 394 KCSRSNTYGASSTTSHGSAIQSEDEPDTANEYHSNLSTNEEKP 522
           + S+SNT   S +T  G    S D+  ++++ H      ++KP
Sbjct: 352 EASKSNTPPRSESTETGKRSSSSDKKGSSHDLHPQSKARKQKP 394


>At2g28450.1 68415.m03456 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 809

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
 Frame = -2

Query: 893 EASNGLLVRPK-VQNFTQGPLTXGLEPQKLPKQSLWTFSGITSQYKAIFRESFHGQSTGF 717
           E S GL ++ K    F+ G    G+   + P       S I SQY +IF++         
Sbjct: 336 EFSVGLSLQGKPTVGFSLGSFCAGVTAVEEPVDCP-NVSKIASQYASIFQKFIENSKFQV 394

Query: 716 GLKFGYPEFWKSLGRKRVPPPGSF 645
             +F +  FW+ L  +    PG F
Sbjct: 395 WNRFQHSGFWRQLTVREGRKPGVF 418


>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]; similar to rab11 binding protein GI:4512103
           from [Bos taurus]
          Length = 593

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 397 CSRSNTYGASSTTSHGSAIQSEDEPDTANEYHSNLSTNEEKPA*K 531
           C R   YG++++ S       +D+ D + E  SN ST+  + + K
Sbjct: 97  CVREENYGSTTSISDEELEGVDDDDDDSEEISSNASTSPSRSSSK 141


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,533,574
Number of Sequences: 28952
Number of extensions: 451671
Number of successful extensions: 1068
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2197951248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)