Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40140
         (893 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    24   1.8  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    24   1.8  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    23   3.2  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    23   3.2  
DQ855489-1|ABH88176.1|  122|Tribolium castaneum chemosensory pro...    22   5.6  
AJ973444-1|CAJ01491.1|  122|Tribolium castaneum hypothetical pro...    22   5.6  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 331 WTSPPRTAAATPVSTAGLCDSSV 263
           W+SPP   AA+  +  G+  SSV
Sbjct: 125 WSSPPDARAASDAARRGVLYSSV 147


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 331 WTSPPRTAAATPVSTAGLCDSSV 263
           W+SPP   AA+  +  G+  SSV
Sbjct: 281 WSSPPDARAASDAARRGVLYSSV 303


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 778 LFMKWLNTAHFQFKISNWTLLCKTLSVTETQK 683
           L++  +N+     K   W LL KTL+  E +K
Sbjct: 145 LWLSNVNSLTLTLKRKKWNLLFKTLTHDEPRK 176


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 778 LFMKWLNTAHFQFKISNWTLLCKTLSVTETQK 683
           L++  +N+     K   W LL KTL+  E +K
Sbjct: 71  LWLSNVNSLTLTLKRKKWNLLFKTLTHDEPRK 102


>DQ855489-1|ABH88176.1|  122|Tribolium castaneum chemosensory
           protein 2 protein.
          Length = 122

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -2

Query: 721 LLCKTLSVTETQKDYN-YPTESLFV*MAHVLHNKLRFDH 608
           ++   L  T     Y+ YPT+   V +  +LHNK  FD+
Sbjct: 4   IILAVLIATAVAATYDVYPTKYDNVDIDAILHNKRLFDN 42


>AJ973444-1|CAJ01491.1|  122|Tribolium castaneum hypothetical
           protein protein.
          Length = 122

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -2

Query: 721 LLCKTLSVTETQKDYN-YPTESLFV*MAHVLHNKLRFDH 608
           ++   L  T     Y+ YPT+   V +  +LHNK  FD+
Sbjct: 4   IILAVLIATAVAATYDVYPTKYDNVDIDAILHNKRLFDN 42


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,991
Number of Sequences: 336
Number of extensions: 4111
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24823920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)