Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40140
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0045 - 7705728-7707581                                           31   1.2  
03_05_0065 + 20450814-20452748                                         30   2.9  
05_03_0184 + 9339939-9340896,9341003-9341083,9341166-9341383,934...    29   5.0  
05_01_0512 - 4259162-4259849,4260209-4260432,4260854-4261071,426...    29   5.0  
02_01_0685 - 5079179-5079601                                           29   5.0  
10_07_0020 - 11944054-11944653,11944734-11944847,11944917-119449...    29   6.6  
09_04_0090 + 14512641-14513355,14514158-14514219                       28   8.7  

>11_02_0045 - 7705728-7707581
          Length = 617

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = -1

Query: 425 ACSPSLELEPPDSERWLRARCVFFLSSPGASVDVASSDCRCHAGIDGGSVRLFSDGNDSC 246
           AC   L++    S RWL +RCV   S P AS   ++      A     S     DG  + 
Sbjct: 99  ACPAMLQVNRRPSSRWLVSRCVLLHSHPLASSSSSADAAATDAAEPNDSSSAEQDGGAAA 158

Query: 245 SIKSL 231
           +  +L
Sbjct: 159 AAAAL 163


>03_05_0065 + 20450814-20452748
          Length = 644

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -2

Query: 325 SPPRTAAATPVSTAGLCDSSVTG 257
           S PR AAAT VSTA   D++V G
Sbjct: 14  SKPRPAAATSVSTAATADAAVAG 36


>05_03_0184 +
           9339939-9340896,9341003-9341083,9341166-9341383,
           9341796-9342019,9342409-9343096
          Length = 722

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 479 SPLDVFVAPPPPLTRTLC 532
           SP+  FV PPPPL   LC
Sbjct: 136 SPVSTFVPPPPPLPPELC 153


>05_01_0512 -
           4259162-4259849,4260209-4260432,4260854-4261071,
           4261154-4261234,4261342-4262299
          Length = 722

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 479 SPLDVFVAPPPPLTRTLC 532
           SP+  FV PPPPL   LC
Sbjct: 136 SPVSTFVPPPPPLPPELC 153


>02_01_0685 - 5079179-5079601
          Length = 140

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 461 SETSPVSPLDVFVAPPPPLTRTLCYPAVGFDIIQVYINKTLSVL 592
           + TS V  +   VAPPP  +    Y  +GF ++   I   L+VL
Sbjct: 11  ASTSSVPAMPAAVAPPPFWSTPTPYLFIGFGVVMALIAVALAVL 54


>10_07_0020 -
           11944054-11944653,11944734-11944847,11944917-11944976,
           11945154-11945474,11945556-11945594
          Length = 377

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = +1

Query: 259 PSLKSRTDPPS----IPAWQRQSEEATSTEAPGEDKKKT 363
           P  K++ D P     +PA     E+A   E  GEDKKKT
Sbjct: 86  PKKKTKKDKPKPADDLPALDPSIEQALDEEEIGEDKKKT 124


>09_04_0090 + 14512641-14513355,14514158-14514219
          Length = 258

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 264 TEESHRPAVDTGVAAAVRGGDVH 332
           +  SHR A DT +++A RGGD H
Sbjct: 140 SSSSHRAAGDTRMSSAERGGDHH 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,068,703
Number of Sequences: 37544
Number of extensions: 494023
Number of successful extensions: 1640
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1640
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)