Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40140
(893 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78014-1|CAB01428.1| 411|Caenorhabditis elegans Hypothetical pr... 32 0.64
Z92973-7|CAB07494.1| 1213|Caenorhabditis elegans Hypothetical pr... 24 2.9
Z81481-10|CAB03951.1| 1213|Caenorhabditis elegans Hypothetical p... 24 2.9
AC199169-1|ABO33259.1| 450|Caenorhabditis elegans Hypothetical ... 29 3.4
Z99281-18|CAD56258.1| 380|Caenorhabditis elegans Hypothetical p... 29 4.5
Z81094-5|CAB03149.2| 675|Caenorhabditis elegans Hypothetical pr... 29 5.9
AF536544-1|AAN77185.1| 675|Caenorhabditis elegans SR-related CT... 29 5.9
Z81128-9|CAC42344.1| 239|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 28 7.8
>Z78014-1|CAB01428.1| 411|Caenorhabditis elegans Hypothetical
protein F42E8.1 protein.
Length = 411
Score = 31.9 bits (69), Expect = 0.64
Identities = 20/69 (28%), Positives = 38/69 (55%)
Frame = +2
Query: 47 RHLIFVDQPKRKTTNECLEEVRKSLEDLNTNVFALKGELNSLQQNTFRCSLDTIKGDIAS 226
+HL + K+ T ++CL+E + S+EDLN++ +L+ Q+ S T D S
Sbjct: 231 KHLKNLKLAKQLTKSKCLDEAQSSVEDLNSDTKLEDLQLHICQRGIENFSGSTF-FDYFS 289
Query: 227 VKGILLNRN 253
+K +++ R+
Sbjct: 290 MKALVIMRS 298
>Z92973-7|CAB07494.1| 1213|Caenorhabditis elegans Hypothetical protein
C38D9.5 protein.
Length = 1213
Score = 24.2 bits (50), Expect(2) = 2.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 645 WLTSCITSSVSITYD*KQRTLNVLF 571
WL +CI S +IT + K R +LF
Sbjct: 1009 WLKACIDKSSTITDNMKFRVTKMLF 1033
Score = 23.8 bits (49), Expect(2) = 2.9
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -3
Query: 756 QHTFNLKSVTGHCYAKRC 703
QH FN + GH + K C
Sbjct: 996 QHIFNASMIMGHRWLKAC 1013
>Z81481-10|CAB03951.1| 1213|Caenorhabditis elegans Hypothetical
protein C38D9.5 protein.
Length = 1213
Score = 24.2 bits (50), Expect(2) = 2.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 645 WLTSCITSSVSITYD*KQRTLNVLF 571
WL +CI S +IT + K R +LF
Sbjct: 1009 WLKACIDKSSTITDNMKFRVTKMLF 1033
Score = 23.8 bits (49), Expect(2) = 2.9
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -3
Query: 756 QHTFNLKSVTGHCYAKRC 703
QH FN + GH + K C
Sbjct: 996 QHIFNASMIMGHRWLKAC 1013
>AC199169-1|ABO33259.1| 450|Caenorhabditis elegans Hypothetical
protein F38A1.8 protein.
Length = 450
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 71 PKRKTTNECLEEVRKSLEDLNTNVFALKGELNSLQQN 181
PK N EE + +E + + LKG+L SLQ++
Sbjct: 259 PKENDENAADEEKNRFVESMKEQIGTLKGDLKSLQES 295
>Z99281-18|CAD56258.1| 380|Caenorhabditis elegans Hypothetical
protein Y57G11C.36 protein.
Length = 380
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 77 RKTTNECLEEVRKSLEDLNTNVFALKGELNSLQQ 178
+ T+N +E+ K+L D+ + ALKGE + L Q
Sbjct: 40 KSTSNHSDQEMSKNLHDVEAYIDALKGEKHQLAQ 73
>Z81094-5|CAB03149.2| 675|Caenorhabditis elegans Hypothetical
protein F58G11.5 protein.
Length = 675
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +1
Query: 232 RDFI--EQESFPSLKSRTDPPSIPAWQRQSEEATSTEAPGEDKKKTHR 369
RDF E++S PSL DPP I W+++ +E E HR
Sbjct: 28 RDFPPPERQSIPSLM---DPPEIVEWRKKIDELRQKIIDSEQNLNAHR 72
>AF536544-1|AAN77185.1| 675|Caenorhabditis elegans SR-related CTD
associated factor 6 protein.
Length = 675
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +1
Query: 232 RDFI--EQESFPSLKSRTDPPSIPAWQRQSEEATSTEAPGEDKKKTHR 369
RDF E++S PSL DPP I W+++ +E E HR
Sbjct: 28 RDFPPPERQSIPSLM---DPPEIVEWRKKIDELRQKIIDSEQNLNAHR 72
>Z81128-9|CAC42344.1| 239|Caenorhabditis elegans Hypothetical
protein T23D8.9b protein.
Length = 239
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -2
Query: 535 VAQCPCQGRWWRHEYVEGRDWASLTELSPSCCRCSWSPAL 416
+ Q PC+ W+ +Y G D +L +L CR +++ +L
Sbjct: 199 IHQIPCKDFIWQKQYELGYDKINLHKLIRQICRTAYNKSL 238
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
protein F29G6.1 protein.
Length = 1170
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +2
Query: 20 CYWFYKNCVRHLIFVDQPKRKTTNECLEEVRKSLEDLNTNVFALKGELNSLQQNTFRCSL 199
C +NC L +DQPK ++ + E +D ++N K + ++NTF CS+
Sbjct: 713 CELNIENC--KLKKLDQPKLVVVSQGICEKDMLTDDFSSNRNFQKPNIEFKRENTFNCSM 770
Query: 200 D 202
+
Sbjct: 771 E 771
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,299,895
Number of Sequences: 27780
Number of extensions: 406712
Number of successful extensions: 1138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -