Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40140
         (893 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    25   0.71 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   1.2  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    24   1.6  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 25.4 bits (53), Expect = 0.71
 Identities = 11/43 (25%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 755 CV*PFHKEA-TCFIVLLEYNLRVHIDYVNIVNFTVVRGIRPLK 880
           CV P+ +++ +C++ + +++  + +  VN VN T+     P+K
Sbjct: 110 CVNPYDRDSLSCWLQMTKHHNFIKVCSVNDVNMTITELTDPVK 152


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = -2

Query: 784 CGLFMKWLNTAHFQFKISNWTLLCKTLSVTETQKDYNYPT 665
           C  ++KW N     FK+ +   + +   + + + D NY T
Sbjct: 474 CPRYIKWTNRERGVFKLVDSKAVSRLWGLHKNKPDMNYET 513


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
 Frame = +2

Query: 89  NECLEEVRKSLEDLNTNVFALK-----GELNSLQQNT 184
           NECL  ++KS   L   +FA K      EL S QQ T
Sbjct: 485 NECLLNIQKSPRTLTLGIFAEKLRLETKELFSSQQKT 521


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,869
Number of Sequences: 438
Number of extensions: 5106
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)