Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40140
         (893 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05420.1 68414.m00550 ovate protein-related contains TIGRFAM ...    31   1.4  
At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding protei...    30   1.8  
At4g10930.1 68417.m01778 expressed protein                             29   4.2  
At4g33390.1 68417.m04746 hypothetical protein contains Pfam prof...    29   5.5  
At3g06180.1 68416.m00710 expressed protein                             29   5.5  
At5g33410.1 68418.m03993 replication protein-related weak simila...    28   9.6  

>At1g05420.1 68414.m00550 ovate protein-related contains TIGRFAM
           TIGR01568 : uncharacterized plant-specific domain
           TIGR01568
          Length = 226

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -1

Query: 419 SPSLELEPPDSERWLRARCVFFLSSPGASVDVASS-DCRCHAGIDGGSVRLFSDG 258
           +P  +  PPD    L +R  FF SSPG S  +  S D RC    D  + RL + G
Sbjct: 97  APDDDSPPPDLTAVLASRR-FFFSSPGCSNSITDSPDLRCRDNYD-TATRLLTGG 149


>At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding
           protein-related similar to matrix-localized MAR DNA
           binding protein MFP1 GI:1771158 from [Lycopersicon
           esculentum]
          Length = 726

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +2

Query: 56  IFVDQPKRKTTNECLEEVRKSLEDLNTNVFALKGELNSLQQNTFRCSLDTIK 211
           I +++  RK+    LEE  KSL+++N N   L  EL  +  NT   +L+  K
Sbjct: 580 ILMEREARKSLETDLEEAVKSLDEMNKNTSILSRELEKV--NTHASNLEDEK 629


>At4g10930.1 68417.m01778 expressed protein
          Length = 984

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/69 (26%), Positives = 27/69 (39%)
 Frame = -2

Query: 592 ENA*CLIYVHLNDIEAHRWVAQCPCQGRWWRHEYVEGRDWASLTELSPSCCRCSWSPALP 413
           EN    IY  LN      W   C  +  +W+H  ++GR    +  L          PA  
Sbjct: 333 ENLTKKIYADLNGKRKSAWHRDCEVE--FWKHRCIQGRKPEKIETLKSVLSLLKNKPADT 390

Query: 412 RWSWSRRTP 386
           + ++S  TP
Sbjct: 391 KTNFSSETP 399


>At4g33390.1 68417.m04746 hypothetical protein contains Pfam profile
           PF05701: Plant protein of unknown function (DUF827)
          Length = 779

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +2

Query: 68  QPKRKTTNECLEEVRKSLEDLNTNVFALKGELNSLQ--QNTFRCSLDTIKGDIASVK 232
           Q K     + +   +K LE++N NV     E+N L+   ++ R  +D  K  + S+K
Sbjct: 444 QEKTTDIQKAVASAKKELEEVNANVEKATSEVNCLKVASSSLRLEIDKEKSALDSLK 500


>At3g06180.1 68416.m00710 expressed protein 
          Length = 241

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +1

Query: 64  RSTKAQDYERMP-RGGSEKSRRFEYQCLRTEGRIEFPP 174
           +S   ++ +R+P +GGSE +   +Y+CLR E R   PP
Sbjct: 160 KSGATKEIDRLPWKGGSESNP--DYECLRAELRRMAPP 195


>At5g33410.1 68418.m03993 replication protein-related weak
           similarity to Replication Protein A 70  kDa DNA-binding
           subunit (RP-A) (RF-A) (Replication factor-A protein 1)
           (Single-stranded DNA-binding protein) (DMRPA1)
           (GI:2498844)(SP:Q24492) [Drosophila melanogaster]
          Length = 251

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 520 CQGRWWRHEYVEGRDWASLTELSPSCCRCSWSPALPRW 407
           C  R+WR  YV+G +   L+E  P C R    P+ P +
Sbjct: 211 CAVRFWRIAYVQGEN-VLLSE--PGCSRLDIDPSFPHF 245


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,195,338
Number of Sequences: 28952
Number of extensions: 376874
Number of successful extensions: 1109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)