Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40137
(509 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 139 3e-34
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 139 3e-34
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz... 38 0.001
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.40
SPBC582.09 |pex11||peroxisomal biogenesis factor 11|Schizosaccha... 27 1.6
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 27 2.2
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 27 2.2
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 26 3.8
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom... 25 5.0
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 25 6.6
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 6.6
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 25 8.7
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 8.7
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 25 8.7
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 139 bits (336), Expect = 3e-34
Identities = 67/85 (78%), Positives = 74/85 (87%)
Frame = +1
Query: 1 LPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENP 180
LPH+AGR+ KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NP
Sbjct: 48 LPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNP 107
Query: 181 LQVLVTAIINSGPREDSTRIGRAGT 255
LQVLV A+ GPREDSTRIG AGT
Sbjct: 108 LQVLVDAVAACGPREDSTRIGSAGT 132
Score = 128 bits (309), Expect = 5e-31
Identities = 62/75 (82%), Positives = 70/75 (93%)
Frame = +3
Query: 243 SCGYVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYA 422
S G VRRQAVDVSPLRRVNQA+ L+ GAREAAFRN+K+I+EC+A+E+INAAKGSSNSYA
Sbjct: 129 SAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYA 188
Query: 423 IKKKDELERVAKSNR 467
IKKKDELERVAKSNR
Sbjct: 189 IKKKDELERVAKSNR 203
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 139 bits (336), Expect = 3e-34
Identities = 67/85 (78%), Positives = 74/85 (87%)
Frame = +1
Query: 1 LPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENP 180
LPH+AGR+ KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NP
Sbjct: 48 LPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNP 107
Query: 181 LQVLVTAIINSGPREDSTRIGRAGT 255
LQVLV A+ GPREDSTRIG AGT
Sbjct: 108 LQVLVDAVAACGPREDSTRIGSAGT 132
Score = 128 bits (309), Expect = 5e-31
Identities = 62/75 (82%), Positives = 70/75 (93%)
Frame = +3
Query: 243 SCGYVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYA 422
S G VRRQAVDVSPLRRVNQA+ L+ GAREAAFRN+K+I+EC+A+E+INAAKGSSNSYA
Sbjct: 129 SAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYA 188
Query: 423 IKKKDELERVAKSNR 467
IKKKDELERVAKSNR
Sbjct: 189 IKKKDELERVAKSNR 203
>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
S7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 37.5 bits (83), Expect = 0.001
Identities = 23/53 (43%), Positives = 28/53 (52%)
Frame = +1
Query: 61 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGP 219
V+ L N +M +GKK A +IV A II TGENP+ VL AI P
Sbjct: 126 VQHLVNLIM----RDGKKAKAEKIVATALSIIQKETGENPIDVLKQAIAEISP 174
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 29.1 bits (62), Expect = 0.40
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 120 GRTYCQTCV*NYSLVNWRKPSASTRDCHYQLWT 218
G TYC C L+NW K S S C +L+T
Sbjct: 101 GHTYCYEC-----LLNWLKESKSCPTCRQKLYT 128
>SPBC582.09 |pex11||peroxisomal biogenesis factor
11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 238
Score = 27.1 bits (57), Expect = 1.6
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 172 ENPLQVLVTAIINSGPREDSTRIGRAGTFVVKPLMFH 282
ENP V V ++NS P D T RA FV K L +H
Sbjct: 6 ENPQYVHVLRMLNSMPARDKT--FRALQFVAKLLSWH 40
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 394 QLRVHLTPTPSKRRTSWSVLLNPTV 468
Q ++H P P +RR S + L NP++
Sbjct: 124 QQKIHRNPQPRRRRRSTTALPNPSL 148
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 26.6 bits (56), Expect = 2.2
Identities = 21/75 (28%), Positives = 35/75 (46%)
Frame = +1
Query: 160 LLTGENPLQVLVTAIINSGPREDSTRIGRAGTFVVKPLMFHPCAESTKQSGFCAQVHVRL 339
LL+G+N ++ +T N G + DS+ + T V+ L + P ++ S C R+
Sbjct: 261 LLSGDNANEIFLTKYSNGGWQTDSSPF-LSHTAAVEDLQWSPSEKNVFSSCSCDGT-FRI 318
Query: 340 HSEILKQSQSVLQMN 384
KQ S L +N
Sbjct: 319 WDVRNKQKTSALTVN 333
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 3.8
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 69 PYKLSNDARSEQWQKTDGRTYCQTCV*NYSLVNWRKPSAST 191
PYK+ + + W + G+TY + + + L R+ +AST
Sbjct: 138 PYKIVEHSNGDAWLEARGKTYSPSQIGGFILSKMRE-TAST 177
>SPBC691.05c ||SPBP22H7.01c|membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 668
Score = 25.4 bits (53), Expect = 5.0
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 243 SCGYVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVA 377
S GY+ + ++PLR NQ I+ L T A+ + I + + ++
Sbjct: 409 SVGYIAKSTFKLNPLRLRNQYIYFL-TNAQVINYITILAVPQLIS 452
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 25.0 bits (52), Expect = 6.6
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 19 RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIH 159
+Y KR A+ +V R H R N KL + + H F ++H
Sbjct: 390 KYPRKRQEIAE--LVIRCLQDRSSHVRRNAIKLFSKLLTTHPFSVMH 434
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.0 bits (52), Expect = 6.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 381 ELINAAKGSSNSYAIKKKDELER 449
E +N+ + NS ++KKDELE+
Sbjct: 133 EKLNSEISNQNSLILQKKDELEK 155
>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 707
Score = 24.6 bits (51), Expect = 8.7
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -2
Query: 313 SQIAWLTRRKGETSTA*RRTYP 248
SQ AWL+R KG S YP
Sbjct: 445 SQAAWLSREKGVASELQSLVYP 466
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 24.6 bits (51), Expect = 8.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 148 EIIHLLTGENPLQVLVTAIINSGPREDSTR 237
EI +LTGENP ++ AI+ R + R
Sbjct: 1034 EIFLMLTGENPEELQADAIVPVNVRRVTNR 1063
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 24.6 bits (51), Expect = 8.7
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = +3
Query: 189 TRDCHYQLWTP*RFD*DRSCGYVRRQAVDVSPLRRVNQAI----WLLCTGA 329
TR +LW P + RS + PL+R N +I WL+C GA
Sbjct: 157 TRAFGMRLWKPALYKKFRSINRDADIDIHDEPLKRPNTSISNVIWLICFGA 207
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,128,013
Number of Sequences: 5004
Number of extensions: 40994
Number of successful extensions: 89
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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