Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40137
         (509 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300...   155   1e-38
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419          155   3e-38
01_07_0219 + 42079095-42079399,42079584-42079728,42081695-420817...    31   0.41 
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201...    27   6.6  
04_04_1155 - 31308704-31309051,31309301-31309451,31309532-313097...    27   8.8  

>11_04_0317 -
           16328558-16328612,16328698-16328901,16329794-16330065,
           16330152-16330220
          Length = 199

 Score =  155 bits (377), Expect = 1e-38
 Identities = 72/84 (85%), Positives = 78/84 (92%)
 Frame = +1

Query: 1   LPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENP 180
           LPH+AGRY+ KRFRKAQCPIVERLTNSLMMHGRNNGKK+MAVRIVKHA EIIHLLT  NP
Sbjct: 44  LPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANP 103

Query: 181 LQVLVTAIINSGPREDSTRIGRAG 252
           +QV+V AIINSGPRED+TRIG AG
Sbjct: 104 IQVIVDAIINSGPREDATRIGSAG 127



 Score =  136 bits (329), Expect = 1e-32
 Identities = 66/75 (88%), Positives = 72/75 (96%)
 Frame = +3

Query: 243 SCGYVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYA 422
           S G VRRQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAEC+ADELINAAKGSSNSYA
Sbjct: 125 SAGAVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYA 184

Query: 423 IKKKDELERVAKSNR 467
           IKKKDE+ERVAK+NR
Sbjct: 185 IKKKDEIERVAKANR 199


>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
          Length = 200

 Score =  155 bits (375), Expect = 3e-38
 Identities = 71/84 (84%), Positives = 78/84 (92%)
 Frame = +1

Query: 1   LPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENP 180
           LPH+AGRY+ KRFRKAQCP+VERLTNSLMMHGRNNGKK+MAVRIVKHA EIIHLLT  NP
Sbjct: 45  LPHTAGRYSAKRFRKAQCPLVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANP 104

Query: 181 LQVLVTAIINSGPREDSTRIGRAG 252
           +QV+V AIINSGPRED+TRIG AG
Sbjct: 105 IQVIVDAIINSGPREDATRIGSAG 128



 Score =  136 bits (329), Expect = 1e-32
 Identities = 66/75 (88%), Positives = 72/75 (96%)
 Frame = +3

Query: 243 SCGYVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYA 422
           S G VRRQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAEC+ADELINAAKGSSNSYA
Sbjct: 126 SAGAVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYA 185

Query: 423 IKKKDELERVAKSNR 467
           IKKKDE+ERVAK+NR
Sbjct: 186 IKKKDEIERVAKANR 200


>01_07_0219 +
           42079095-42079399,42079584-42079728,42081695-42081739,
           42082150-42082265,42082913-42083012,42083103-42083138,
           42083301-42083351,42083431-42083565
          Length = 310

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +3

Query: 258 RRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNS 416
           RR+AV  + +RR+  A WL   GAR A  R         A E++ +A G   S
Sbjct: 9   RREAVRAAHVRRIEAAAWL---GARRATRREDAAARCAAAGEVVGSAAGVGRS 58


>07_03_1503 + 27017933-27018063,27019668-27019727,27019996-27020101,
            27020254-27020325,27021008-27021061,27021707-27021856,
            27022206-27022547,27022651-27024684,27024706-27024947,
            27025658-27026235,27026329-27028183,27028533-27028851,
            27028980-27029417
          Length = 2126

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 61   VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTG 171
            +  L    ++HG  N ++++AV  +K   +I+HLL G
Sbjct: 1328 ISALVVGSVIHGVVNIERMVAVLKIKDGLDILHLLRG 1364


>04_04_1155 -
           31308704-31309051,31309301-31309451,31309532-31309763,
           31309854-31310064,31310304-31310422,31310507-31310581,
           31310789-31310990,31311075-31311454,31311569-31311633,
           31311735-31311779,31312166-31312231,31312667-31312741,
           31313022-31313093,31313659-31313727,31313813-31313884,
           31313995-31314066,31314441-31314512,31314597-31314668,
           31315091-31315162,31315279-31315474,31316094-31316202
          Length = 924

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -2

Query: 124 RPSVFCHCSDRASLESL*GAPRLGTGLYGNACVHTCQLNE 5
           RP+VF +   R++ E+   + RLG G YG   V+  +LN+
Sbjct: 579 RPNVFSYSELRSATENFSSSNRLGEGGYG--AVYKGKLND 616


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,840,799
Number of Sequences: 37544
Number of extensions: 269242
Number of successful extensions: 653
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)