Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40137
         (509 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)               168   3e-42
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)               31   0.55 
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    31   0.73 
SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)           28   3.9  
SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20)              27   6.8  
SB_7266| Best HMM Match : UPAR_LY6 (HMM E-Value=0.015)                 27   9.0  

>SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)
          Length = 272

 Score =  168 bits (408), Expect = 3e-42
 Identities = 77/85 (90%), Positives = 82/85 (96%)
 Frame = +1

Query: 1   LPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENP 180
           LPH+AGRYA KRFRKAQCPIVER+TNS+MMHGRNNGKKLM VRI+KH+FEIIHLLTGENP
Sbjct: 117 LPHTAGRYAAKRFRKAQCPIVERITNSMMMHGRNNGKKLMTVRIIKHSFEIIHLLTGENP 176

Query: 181 LQVLVTAIINSGPREDSTRIGRAGT 255
           LQVLV AIINSGPREDSTRIGRAGT
Sbjct: 177 LQVLVNAIINSGPREDSTRIGRAGT 201



 Score =  143 bits (346), Expect = 9e-35
 Identities = 69/73 (94%), Positives = 72/73 (98%)
 Frame = +3

Query: 249 GYVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIK 428
           G VRRQAVDVSPLRRVNQAIWLLCTGARE+AFRNIK+IAEC+ADELINAAKGSSNSYAIK
Sbjct: 200 GTVRRQAVDVSPLRRVNQAIWLLCTGARESAFRNIKSIAECLADELINAAKGSSNSYAIK 259

Query: 429 KKDELERVAKSNR 467
           KKDELERVAKSNR
Sbjct: 260 KKDELERVAKSNR 272


>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
          Length = 762

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +3

Query: 357 TIAECVADELINAAKGSSNSY--AIKKKDELERVAK 458
           T  +C+ DEL +  +G  NSY   +K+K+ELER  K
Sbjct: 422 TEVQCLRDELKDNEQGMDNSYQAILKEKEELERSHK 457


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = -1

Query: 395  CIN*FICNTLCDCFNISECSLTCTCAQKPDCLVDSAQG*NINGLTTNVPARP 240
            C+N  +C+    C  +   SLTCTC   P  L +      IN   +N P RP
Sbjct: 2164 CVNETVCDGNATCARVKGTSLTCTC--NPGYLGNGRWCDEINECISN-PCRP 2212


>SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)
          Length = 328

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -1

Query: 377 CNTLCDCFNISECSLTCTCAQKPDCLVDSA 288
           C   C C   + C   CTC Q   C+V SA
Sbjct: 226 CCVTCRCSVCTCCPCDCTCLQCAPCIVFSA 255


>SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20)
          Length = 359

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 404 TLSCIN*FICNTLCDCFNISECSLTCTCAQKPDC 303
           T  C +   C +  +C + SEC  T  CA   +C
Sbjct: 94  TRECESTSECESTTECESTSECESTSECASTTEC 127


>SB_7266| Best HMM Match : UPAR_LY6 (HMM E-Value=0.015)
          Length = 513

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -1

Query: 359 CFNISECSLTCTC---AQKPDCLVDSAQG*NINGLTTNVPA 246
           C +  ECS +  C   +QK +C+V        N  TTNVP+
Sbjct: 67  CIDTKECSSSEMCLKDSQKDNCVVYCCDTDLCNPATTNVPS 107


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,343,063
Number of Sequences: 59808
Number of extensions: 332917
Number of successful extensions: 927
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)