Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40136
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    29   0.34 
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    27   1.8  
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    26   4.1  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    25   5.5  
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat...    25   7.2  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   7.2  
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    25   9.5  

>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 17/67 (25%), Positives = 30/67 (44%)
 Frame = +2

Query: 128 VLSSECELSDIVSARIESCRGCSLNRLPEVKRFVMDDAPNYDLSK*NSFLALHQS*SSLE 307
           +L S CE+ D +          + N  PE++R +  D PN +  K   F     + S  E
Sbjct: 440 LLLSRCEVKDCIHRLFMVLYYLNTNSAPELERIIESDLPNNNKQKDRYFKDKTSNLSMKE 499

Query: 308 RETMSSR 328
            ++ S++
Sbjct: 500 NKSFSAK 506


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -2

Query: 370 VHCTVPD*DEIKVVSRAHGLPLQGGLALVERQK*ISLRQIVVRSVI 233
           VH +V   D   VVSRA G+P    L   ER K +++ Q + + +I
Sbjct: 461 VHDSVTSDDIAVVVSRATGIPTT-NLMRGERDKLLNMEQTIGKKII 505


>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 423 LVYTVLYIPLIEIGTYVLY 479
           L+Y +L +P+I +GT +LY
Sbjct: 6   LLYRILTLPIILVGTTILY 24


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 331 LPLSHLNQEQCNELIQSKGFSNNKKS 408
           L  +H N+E+C +L    G+ NN +S
Sbjct: 493 LAAAHRNREKCKKLSVELGYLNNHES 518


>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
           phosphatidyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +1

Query: 259 EVKFISGAPPELILLGEGDHELERLPLSHLNQEQCNELIQSKGFSNNK 402
           E +  + A  + +L G  +  L R P   L+    +ELI   G  NNK
Sbjct: 240 EFRVAASAKIQQLLQGNREKFLSRNPSKPLSSVYGSELINQAGDDNNK 287


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 326 RDYLYLISIRNSAMNLYRAKDSQIIKNLTYKLL-SVYGTVH 445
           RDY  +  +R   +N+  A  SQI+ N   + +  + G  H
Sbjct: 522 RDYYGVFPLRGKLLNVREASHSQILNNKEIQAIKKIMGFTH 562


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -3

Query: 219 FTSGRRFNEHPRQLSIRADTMSDNSHSEDKTKTAQNI 109
           +TS   +N+  ++ +  A   S+N H E K  T   +
Sbjct: 232 WTSDAEYNQSAKEEAPAAAAASENEHPEPKESTTDTV 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,201,065
Number of Sequences: 5004
Number of extensions: 43856
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)