Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40136
         (542 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1645 + 38884606-38884777,38885509-38885567,38885933-388861...    31   0.45 
05_01_0360 + 2814139-2814627,2815203-2815334,2815480-2815583,281...    31   0.59 
10_08_0877 + 21230447-21230815,21231855-21232208,21232417-212325...    30   1.4  
09_02_0434 + 9365038-9366150,9367352-9368680,9368906-9370012,937...    30   1.4  
10_01_0165 - 1869312-1869449,1870486-1872326,1872356-1872719           28   5.5  
06_03_0778 - 24523780-24526353                                         27   7.3  

>01_06_1645 +
           38884606-38884777,38885509-38885567,38885933-38886114,
           38886559-38886634
          Length = 162

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 11/43 (25%), Positives = 26/43 (60%)
 Frame = +1

Query: 256 VEVKFISGAPPELILLGEGDHELERLPLSHLNQEQCNELIQSK 384
           VE +++ G+PP+LI+L +   + E + + +  +E   + ++ K
Sbjct: 112 VEARYVYGSPPKLIMLDDKGDQKETIRIDNWKREHIRQFLKEK 154


>05_01_0360 + 2814139-2814627,2815203-2815334,2815480-2815583,
            2816180-2816292,2818409-2818506,2818636-2818815,
            2818893-2819114,2819270-2819404,2819489-2819771,
            2819858-2819931,2820164-2820384,2820463-2820550,
            2820651-2820744,2820827-2821015,2821369-2821400,
            2821542-2821621,2821718-2821807,2821911-2821980,
            2822240-2822285,2822370-2822428,2822588-2822753,
            2822929-2823107,2823186-2823392,2823529-2823633,
            2823701-2823703
          Length = 1152

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 22/61 (36%), Positives = 34/61 (55%)
 Frame = +1

Query: 259  EVKFISGAPPELILLGEGDHELERLPLSHLNQEQCNELIQSKGFSNNKKSDL*TT*CIRY 438
            EVK++  A  +   +GEGD E +  PL+   QE+  +L++ +GFS   + D  T   IR 
Sbjct: 893  EVKYLVQANQKKDTVGEGDDEDQLEPLTVEEQEEKEQLLE-EGFSTWTRRDFNT--FIRA 949

Query: 439  C 441
            C
Sbjct: 950  C 950


>10_08_0877 +
           21230447-21230815,21231855-21232208,21232417-21232504,
           21232844-21233268,21233477-21233632,21233849-21234016,
           21234170-21234310,21234393-21234629,21234710-21234823,
           21235096-21235272
          Length = 742

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +1

Query: 262 VKFISGAPPELILLGEGDHELERLPLSHLNQEQCNELIQSKGFSNNKKSD 411
           + FI   P EL ++  GD      P S L +  C+   +   +SN + SD
Sbjct: 230 LNFIGSLPRELEVVNSGDASAIEKPQSELFKHDCSSSGKCSEYSNTESSD 279


>09_02_0434 + 9365038-9366150,9367352-9368680,9368906-9370012,
            9370960-9371022
          Length = 1203

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 337  LSHLNQEQCNELIQSKGFSNNKKSDL*TT*CIRYCTF 447
            L HL    CN + Q+ G + N KS + T  C+RY +F
Sbjct: 1072 LQHLEVSYCNSITQAFGHNMN-KSTVPTFPCLRYLSF 1107


>10_01_0165 - 1869312-1869449,1870486-1872326,1872356-1872719
          Length = 780

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +1

Query: 292 LILLGEGD-HELERLPLSHLNQEQCNELIQSKGFSNNKKSD 411
           ++++GE   H LE+L  ++L      E+IQSK FS +KKSD
Sbjct: 296 IMVIGEVPVHNLEKLGEAYLM-----EIIQSKAFSLSKKSD 331


>06_03_0778 - 24523780-24526353
          Length = 857

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/47 (25%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
 Frame = -1

Query: 227 QIVLLLEDDSMSTLDN-SQFGRIQ--CPIIHIPKIKRKLHKILQLIK 96
           +++L  +DD+   L+   +F R+   C I+H P ++  +H+++Q+++
Sbjct: 768 EVLLRSDDDAAEDLERVERFARVAFWC-IVHNPSLRPTIHQVVQMLE 813


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,046,962
Number of Sequences: 37544
Number of extensions: 244368
Number of successful extensions: 516
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)