Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40136
         (542 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14338| Best HMM Match : Spore_permease (HMM E-Value=0.75)           30   1.4  
SB_24645| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_14338| Best HMM Match : Spore_permease (HMM E-Value=0.75)
          Length = 367

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
 Frame = +2

Query: 2   IITTIVCC--SPLKY*FVVQLLKCKFLFRMKITLLSVVIFCAVFVLSSECELSDIVSARI 175
           I++TI+ C  + +    +  ++ C+ L +M +++LS++I C +  + S C LS I+  R+
Sbjct: 102 ILSTIIVCRLTNVSVCILSIIIVCR-LTKMSVSILSIIIVCRLSNV-SVCILSIIIVCRL 159

Query: 176 ESCRGCSLN 202
                C L+
Sbjct: 160 TKVSVCILS 168


>SB_24645| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 226

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 296 SSLERETMSSRDYLYLISIRNSAMNLYRA 382
           S + R+T  S D+L LIS+  +A N+Y A
Sbjct: 162 SGITRKTEDSADWLRLISLCPAATNMYDA 190


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,912,892
Number of Sequences: 59808
Number of extensions: 310548
Number of successful extensions: 627
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)