Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40135
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.11 |||cofilin/tropomyosin family protein|Schizosaccharo...    49   1e-06
SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    31   0.29 
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.88 
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch...    27   2.7  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    27   2.7  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    27   2.7  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    27   4.7  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   8.2  
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-...    26   8.2  

>SPAC17H9.11 |||cofilin/tropomyosin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 141

 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 24/78 (30%), Positives = 42/78 (53%)
 Frame = +2

Query: 254 DILPSHQPRFIVYSYKMEHSDGRTSFPMCFIFYTPRDAHMELQVMYAGTQRALAATVGAP 433
           D L    PRFI+ SY  + +DGR S P+  I++ P     +L ++YA  +          
Sbjct: 61  DELSETNPRFILVSYPTKTTDGRLSTPLFMIYWRPSATPNDLSMIYASAKVWFQDVSQVH 120

Query: 434 RLLEVREIDELTSEWLEE 487
           ++ E R+ +++TSE ++E
Sbjct: 121 KVFEARDSEDITSEAVDE 138


>SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
 Frame = +3

Query: 756 TLDLCLKDGWALFPLVDV----NELRVNHLNTKVGLLKFRPPIL 875
           T+ LC++  ++L PL +     NELR     T +G+  F PPI+
Sbjct: 39  TVHLCVRKIFSLHPLTETDFLPNELRSEEDQTLIGIFWFLPPII 82


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 234 HSPAPHQLLGLVFLYSPLK*EQNWKCVSGNETFSGLPLHHHQ 109
           HSPA   L    FL+SP+  +  W+  +G+   S +P   HQ
Sbjct: 165 HSPAASNLPIPTFLHSPVSEKAEWQPPTGSVN-SNMPFQFHQ 205


>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 545 WTKLGENLVFRFLTETGKISLVRHFDSSQKILQVIHTLGRXHRPG 679
           W  +  +L+ R +   G + +V +FD  Q +   IH +GR  R G
Sbjct: 340 WVLIATDLLARGIDFHG-VKMVINFDFPQSVHSYIHRIGRTGRAG 383


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +2

Query: 545 WTKLGENLVFRFLTETGKISLVRHFDSSQKILQVI--HTLGRXHRPGLVFCREAVVC 709
           + KL ENL  + L E  +I+    +DS+ ++L+ +  H        GL+  R A+VC
Sbjct: 46  YVKLRENLCTKVLNELEEITTHTTYDSNARVLRQLCEHASEPVDETGLL--RTAIVC 100


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = -1

Query: 808 TSTNGKSAHPSLRHK-SKVSGNSYQRLPRPFKTET-HYCFTAKNQAR 674
           T +   SAHP L H  S  S NSYQ LP+  ++ T ++  +A+  AR
Sbjct: 15  TVSQSASAHPELYHTVSHASNNSYQ-LPQLSRSATSNFSTSARFAAR 60


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 847 PTLVFKWFTRSSFTSTNGKSAHPSLRHKSKVSGNS 743
           PT+    F + +F+ T+  SAHPS+  +S    N+
Sbjct: 376 PTVSPNPFLQPTFSGTSQASAHPSIHSQSATFNNT 410


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 787 AHPSLRHKSKVSGNSYQRLPRP 722
           AH + RH S+V+G S    P P
Sbjct: 330 AHDTARHNSRVAGASVSMAPEP 351


>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
           L-lysine forming] |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 368

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 636 IFCELSKCLTNEIFPVSVKNLNTKFSPSFVHV-GVRT 529
           + C++S   TN   P+ + N+NT F    V V GV T
Sbjct: 274 VVCDVSCDTTNPNNPIPIYNVNTTFDHPTVEVKGVTT 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,633,417
Number of Sequences: 5004
Number of extensions: 74819
Number of successful extensions: 203
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)