Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40135
         (889 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0736 - 31585840-31586459,31586545-31587070,31588051-315881...    35   0.099
10_02_0135 + 5674786-5675040,5675179-5675490,5676505-5677010,567...    30   2.1  
03_01_0140 - 1105005-1105321,1105701-1105776,1106343-1106531           29   3.7  
01_06_1792 - 39912714-39913559                                         29   4.9  
04_04_1587 + 34630678-34632282                                         29   6.5  
02_01_0224 - 1461924-1462227,1462602-1462798,1463059-1463213,146...    29   6.5  
01_06_0267 - 28022317-28022580,28023232-28023515,28024067-280244...    28   8.6  

>01_06_0736 -
           31585840-31586459,31586545-31587070,31588051-31588149,
           31589344-31589427,31589458-31589775,31589907-31590113
          Length = 617

 Score = 34.7 bits (76), Expect = 0.099
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
 Frame = +1

Query: 211 KLMRSWRV-LSLKNYRYSAVPSAEIHSLQLQNGAQ*RSDVISDVFYILHTQRRTYGAASY 387
           +++R WR  LS  N   S  PS  +  LQL    +   D  S    ++  Q++   +A+ 
Sbjct: 59  QMLREWRAELSGNNRELSDPPSETLRLLQLAAAEEEEDDATSK---LVEQQQQHPPSANQ 115

Query: 388 VRGHTEGAGGHRRSPETARSPGDRRADL 471
             GH +  GG    PE         ADL
Sbjct: 116 AHGHPQAQGGQDMKPEPPEEAVASPADL 143


>10_02_0135 +
           5674786-5675040,5675179-5675490,5676505-5677010,
           5677057-5677103,5677457-5677918,5678071-5678294
          Length = 601

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +1

Query: 358 QRRTYGAASYVRGHTEGAGGHRRSPETARSPGDRRADLGMARRETEKIIN*LKQIKA 528
           Q   +G  S  RG T G    R    +A    +R ADLG+   ++   +  +KQ K+
Sbjct: 256 QTPRHGKRSLTRGTTSGGSSKRSRGSSASDALNRLADLGVQSNDSRTRMEEIKQAKS 312


>03_01_0140 - 1105005-1105321,1105701-1105776,1106343-1106531
          Length = 193

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 418 GRQRPLCARVHNLQLHMCVSGCVEYKTH 335
           GR RPL  +   L++ MC SGC     H
Sbjct: 55  GRSRPLSLQTVELKVRMCCSGCERVVKH 82


>01_06_1792 - 39912714-39913559
          Length = 281

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 370 YGAASYVRGHTEGAGGHRRSPETARSPGDRR 462
           Y  +SY  G   G GG RRS    R  GD++
Sbjct: 9   YDTSSYGAGSGGGGGGGRRSSSPPRGAGDKK 39


>04_04_1587 + 34630678-34632282
          Length = 534

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = +1

Query: 394 GHTEGAGGHRRSPETARSPGDRRADLG 474
           GH +GAGG    P T  SP DR A LG
Sbjct: 35  GH-DGAGGDDEPPPTPCSPADRAALLG 60


>02_01_0224 -
           1461924-1462227,1462602-1462798,1463059-1463213,
           1464101-1464207,1464289-1464375,1465332-1465414,
           1465959-1466027,1466332-1466658,1466744-1466957,
           1467170-1467267,1467516-1467554,1467672-1468160
          Length = 722

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +1

Query: 406 GAGGHRRSPETARSPGDRRADLGMARRETEKIIN*LKQIK-ACPHADVDEARRKLSI 573
           G GG  R    AR   DRR ++   +RE  ++   +  +K  C     D  R+ L I
Sbjct: 139 GGGGGARRERDAREAADRR-EVERLKRELNRVSKQMNDVKNECSELKKDRTRKDLEI 194


>01_06_0267 -
           28022317-28022580,28023232-28023515,28024067-28024463,
           28024563-28024736
          Length = 372

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 627 HRKYYKLFIHWVGXTALAWFFAVKQ*CVSVLKG-RGSRW 740
           +RKY+  + HWVG  AL  FFA     + +  G  G+ W
Sbjct: 299 YRKYWNWYHHWVGRLAL--FFAAINIVLGIKVGAAGNSW 335


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,987,065
Number of Sequences: 37544
Number of extensions: 519638
Number of successful extensions: 1496
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1492
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)