Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40135
(889 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55463| Best HMM Match : OPA3 (HMM E-Value=0) 40 0.003
SB_30343| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.033
SB_45531| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-25) 33 0.23
SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077) 33 0.31
SB_3680| Best HMM Match : Keratin_B2 (HMM E-Value=0.0024) 31 1.2
SB_6657| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_51308| Best HMM Match : ATP-synt_F (HMM E-Value=0.14) 29 6.6
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_11506| Best HMM Match : Lectin_C (HMM E-Value=1.1e-26) 28 8.8
>SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)
Length = 387
Score = 39.9 bits (89), Expect = 0.003
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +2
Query: 230 EC*A*RTTDILPSHQPRFIVYSYKMEHSDGRTSFPMCFIFYTPRDAHMELQVMYAGT-QR 406
EC D LP+ +PR+I + ++ +G + IF+ P + ++ +++ A T Q
Sbjct: 295 ECSHEDVLDDLPADEPRYIALNLDYKNVEGADRSKLVLIFWCPDNCEIKSRMVSAATFQD 354
Query: 407 ALAATVGAPRLLEVREIDELTSEWLEE 487
G + LE++E EL+ E L+E
Sbjct: 355 VKKKCPGGAKCLEIQERSELSFEALKE 381
>SB_30343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 140
Score = 36.3 bits (80), Expect = 0.033
Identities = 20/87 (22%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Frame = +2
Query: 230 EC*A*RTTDILPSHQPRFIVYSYKMEHSDGRTSFPMCFIFYTPRDAHMELQVMYAGT-QR 406
EC D LP+ +PR++ + ++ +G + IF+ P + ++ +++ A T +
Sbjct: 48 ECCHDDVLDDLPTDEPRYVALNLDYKNEEGAERSKLVLIFWCPDNCGIKNKMVSAATFKE 107
Query: 407 ALAATVGAPRLLEVREIDELTSEWLEE 487
+ G + LE+++ +L+ E L+E
Sbjct: 108 VMKKCPGGAKCLEIQDRFDLSFEALKE 134
>SB_45531| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-25)
Length = 387
Score = 33.5 bits (73), Expect = 0.23
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +3
Query: 84 AQNVNVCDIGDDVKEVLKKFRFQKHTSNSALI 179
+Q V +CD+ ++ + KKFR +K +N+ALI
Sbjct: 293 SQGVKICDVDPELVKNAKKFRLRKEKTNAALI 324
>SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 33.5 bits (73), Expect = 0.23
Identities = 15/69 (21%), Positives = 33/69 (47%)
Frame = +2
Query: 260 LPSHQPRFIVYSYKMEHSDGRTSFPMCFIFYTPRDAHMELQVMYAGTQRALAATVGAPRL 439
L +PR+I+Y DGR + +IF+ +A ++ +++ A T L ++
Sbjct: 68 LSDSEPRYILYDLNFPRKDGRAFHHLVYIFWCSDNAPIKKRMVSAATNELLKTKFVVKKV 127
Query: 440 LEVREIDEL 466
++ + +L
Sbjct: 128 FQINDRADL 136
>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
Length = 677
Score = 33.1 bits (72), Expect = 0.31
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -1
Query: 778 SLRHKSKVSGNSYQRLPRPFKTETHYCFTAKNQARAVXPTQCMNN 644
+L H SK+ N Y P KT+T++C+ QA PT+ N
Sbjct: 34 NLNHPSKIQSNWYH----PNKTQTNWCYPTNTQANLCHPTKTHAN 74
Score = 33.1 bits (72), Expect = 0.31
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -1
Query: 778 SLRHKSKVSGNSYQRLPRPFKTETHYCFTAKNQARAVXPTQCMNN 644
+L H SK+ N Y P KT+T++C+ QA PT+ N
Sbjct: 566 NLNHPSKIQSNWYH----PNKTQTNWCYPTNTQANLCHPTKTHAN 606
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 769 HKSKVSGNSYQRLPRPFKTETHYCFTAKNQARAVXPTQCMNN 644
H SK+ N Y P KT+T++C+ QA PT+ N
Sbjct: 203 HTSKIQSNWYH----PNKTQTNWCYPTNTQANLCHPTKTHAN 240
Score = 30.7 bits (66), Expect = 1.6
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 11/67 (16%)
Frame = -1
Query: 808 TSTNGKSAHPS-----LRHKSKVSGNSYQ------RLPRPFKTETHYCFTAKNQARAVXP 662
+ T HPS L H +K N Y L P KT+ ++C K QA P
Sbjct: 245 SKTQANCGHPSETQAYLCHPTKTQANWYHPTKTQANLNHPIKTQANWCHPNKTQANWCHP 304
Query: 661 TQCMNNL 641
T+ NL
Sbjct: 305 TKTQANL 311
Score = 29.9 bits (64), Expect = 2.9
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Frame = -1
Query: 808 TSTNGKSAHPSL---RHKSKVSGNSYQRLP----RPFKTETHYCFTAKNQARAVXPTQCM 650
T T HPSL +K+K + N + P+KT+ ++C T+K Q+ P +
Sbjct: 159 TKTQANWNHPSLFLPPYKTKANLNQASKTQANWCHPYKTQANWCHTSKIQSNWYHPNKTQ 218
Query: 649 NNL*Y 635
N Y
Sbjct: 219 TNWCY 223
Score = 28.3 bits (60), Expect = 8.8
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Frame = -1
Query: 808 TSTNGKSAHPSL---RHKSKVSGNSYQRLP----RPFKTETHYCFTAKNQARAVXPTQCM 650
+ T HPSL +K+K + N + P+KT+ ++C K QA P++
Sbjct: 515 SKTQSNWYHPSLFVPPYKTKANLNQASKTQANWCHPYKTQANWCHPTKTQANLNHPSKIQ 574
Query: 649 NN 644
+N
Sbjct: 575 SN 576
>SB_3680| Best HMM Match : Keratin_B2 (HMM E-Value=0.0024)
Length = 180
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 769 HKSKVSGNSYQRLPRPFKTETHYCFTAKNQARAVXPTQCMNN 644
H SK+ N Y P KT+T++C+ QA PT+ N
Sbjct: 48 HTSKIQSNWYH----PNKTQTNWCYPTNTQANLCHPTKTHAN 85
Score = 29.5 bits (63), Expect = 3.8
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 11/67 (16%)
Frame = -1
Query: 808 TSTNGKSAHPS-----LRHKSKVSGNSYQ------RLPRPFKTETHYCFTAKNQARAVXP 662
+ T HPS L H +K+ N Y L P K ++++C K QA P
Sbjct: 90 SKTQANCGHPSETQAYLCHPTKIQANWYHPTKTQANLNHPIKIQSNWCHPNKTQANWCYP 149
Query: 661 TQCMNNL 641
T NL
Sbjct: 150 TNTQANL 156
>SB_6657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +2
Query: 254 DILPSHQPRFIVYSYKMEHSDGRTSFPMCFIFYTPRDAHMELQVMYAGT 400
D LP+ +PR+I E+ +G + IF+ P + + +++ YA T
Sbjct: 59 DDLPADEPRYIGLILDYENKEGAKRSKVLLIFWCPENLNPRVKMPYAMT 107
>SB_51308| Best HMM Match : ATP-synt_F (HMM E-Value=0.14)
Length = 246
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -3
Query: 437 VSGLRRWPPAPSVCPRT*LAAP 372
VSG +PP PSVCP L AP
Sbjct: 6 VSGSGIYPPLPSVCPPQTLTAP 27
>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 565
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = -1
Query: 784 HPSLRHKSKVSGNSYQ-RLPRPFKTETHYCFTAKNQARAVXPTQCMNNL 641
HPS H + Q P KT+ ++C K QA PT+ NL
Sbjct: 408 HPSKTHANWCHPTKTQANWCHPTKTQANWCHPTKTQANWCHPTKTQANL 456
>SB_11506| Best HMM Match : Lectin_C (HMM E-Value=1.1e-26)
Length = 207
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +2
Query: 779 WVGA---FSVGRRK*APRKPLKHQGWAFEVPSTHLKQLKK 889
W+GA F VGR + +KP+K+ W P+++ + K+
Sbjct: 47 WIGATDMFQVGRFRWMDKKPMKYTKWLSGEPTSYSAKPKR 86
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,542,875
Number of Sequences: 59808
Number of extensions: 597770
Number of successful extensions: 1803
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1795
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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