Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40135
         (889 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024801-11|AAN84814.2|  138|Caenorhabditis elegans Hypothetical...    73   4e-13
Z34801-2|CAD82919.1|  884|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z34801-1|CAA84330.1|  860|Caenorhabditis elegans Hypothetical pr...    31   1.1  
L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.       30   1.9  
AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated...    30   1.9  
Z49912-4|CAE17988.1|   78|Caenorhabditis elegans Hypothetical pr...    29   5.9  
U00025-5|AAA50616.1|  170|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AL034392-4|CAA22307.2|  203|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AC024801-11|AAN84814.2|  138|Caenorhabditis elegans Hypothetical
           protein Y50D7A.10 protein.
          Length = 138

 Score = 72.5 bits (170), Expect = 4e-13
 Identities = 33/75 (44%), Positives = 48/75 (64%)
 Frame = +2

Query: 260 LPSHQPRFIVYSYKMEHSDGRTSFPMCFIFYTPRDAHMELQVMYAGTQRALAATVGAPRL 439
           LPS QPRFI+ S+  +HSD R S+PM  I+Y P  +  ELQ++YAG++  +       + 
Sbjct: 61  LPSQQPRFILLSWCKKHSDERISYPMLLIYYCPNGSSPELQMLYAGSRNFIVNECHVSKN 120

Query: 440 LEVREIDELTSEWLE 484
            E+R+IDE+  E LE
Sbjct: 121 TEIRDIDEIDDELLE 135



 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 21/36 (58%), Positives = 28/36 (77%)
 Frame = +3

Query: 90  NVNVCDIGDDVKEVLKKFRFQKHTSNSALILKVNRE 197
           ++ +C I D VKE LKKFRF K T+ +ALILK++RE
Sbjct: 4   SLTICSIPDGVKEDLKKFRFSKSTTMNALILKIDRE 39


>Z34801-2|CAD82919.1|  884|Caenorhabditis elegans Hypothetical
           protein F59A2.1b protein.
          Length = 884

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -2

Query: 729 PGPSKPKHTTASRQ-KTRPGRWXLPNV*ITCNI-FCELSKCLTNEIFPVSVKNLNTK 565
           P  +KP+ T    Q K +PG W  P   +TC     E + C T++   V  KN+ +K
Sbjct: 443 PSNNKPEETGFGDQFKPKPGSWECPGCYVTCKADEIECACCGTSKDGSVKEKNIFSK 499


>Z34801-1|CAA84330.1|  860|Caenorhabditis elegans Hypothetical
           protein F59A2.1a protein.
          Length = 860

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -2

Query: 729 PGPSKPKHTTASRQ-KTRPGRWXLPNV*ITCNI-FCELSKCLTNEIFPVSVKNLNTK 565
           P  +KP+ T    Q K +PG W  P   +TC     E + C T++   V  KN+ +K
Sbjct: 419 PSNNKPEETGFGDQFKPKPGSWECPGCYVTCKADEIECACCGTSKDGSVKEKNIFSK 475


>L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.
          Length = 152

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +2

Query: 341 FIFYTPRDAHMELQVMYAGTQRALAATVGAPRLLEVR 451
           F+ Y P +A +  +++YA + RAL A++G   L +V+
Sbjct: 94  FVQYCPDNAPVRRRMLYASSVRALKASLGLESLFQVQ 130


>AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated
           protein 60, isoform c protein.
          Length = 152

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +2

Query: 341 FIFYTPRDAHMELQVMYAGTQRALAATVGAPRLLEVR 451
           F+ Y P +A +  +++YA + RAL A++G   L +V+
Sbjct: 94  FVQYCPDNAPVRRRMLYASSVRALKASLGLESLFQVQ 130


>Z49912-4|CAE17988.1|   78|Caenorhabditis elegans Hypothetical
           protein T24F1.7 protein.
          Length = 78

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 825 LRGAHLRLPTEKAPTHP*DISPRSQVIVTNGCPGPSK 715
           L+  H +    K P  P D+ P  ++ VTNG  G  +
Sbjct: 38  LKECHFKYNRRKTPEPPRDLGPLPKITVTNGRTGEER 74


>U00025-5|AAA50616.1|  170|Caenorhabditis elegans Hypothetical
           protein PAR2.1 protein.
          Length = 170

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -1

Query: 865 GRNFKSPTLVFKWFTRSSFTSTNGKSAHPSLRHKSKVSGNSYQRLPRPFK 716
           GRN K P L+F   T S F   +G +   + RH   V G   + L +  K
Sbjct: 72  GRNGK-PYLIFNIITNSYFKQQDGTTLDQTERHAVSVFGKQAEILSKTIK 120


>AL034392-4|CAA22307.2|  203|Caenorhabditis elegans Hypothetical
           protein Y40B1A.4 protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 343 YILHTQRRTYGAASYVRGHTEGAGGHR 423
           +I H   +TYG  S++R H  G  G++
Sbjct: 107 HICHLCNKTYGKTSHLRAHLRGHAGNK 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,334,087
Number of Sequences: 27780
Number of extensions: 438114
Number of successful extensions: 1227
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1227
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)