Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40135
         (889 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23000.1 68417.m03318 calcineurin-like phosphoesterase family...    30   2.4  
At1g03190.2 68414.m00297 DNA repair protein / transcription fact...    29   5.4  
At1g03190.1 68414.m00296 DNA repair protein / transcription fact...    29   5.4  
At3g01770.1 68416.m00116 DNA-binding bromodomain-containing prot...    28   7.2  

>At4g23000.1 68417.m03318 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 932

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 865 GRNFKSPTLVFKWFTRSSFTSTNGKSAHPSLRHKSKVS-GN 746
           G  F  PT VF+ F++    S   KSA+PS    S+++ GN
Sbjct: 666 GGAFLHPTHVFRCFSKFYGASYESKSAYPSFEDSSRIALGN 706


>At1g03190.2 68414.m00297 DNA repair protein / transcription factor
           protein (UVH6) identical to DNA repair/transcription
           factor protein (UVH6) gi:22651569 gb:AY090788
          Length = 758

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = -2

Query: 864 DGTSKAQPWCLSGLRGAHLRLPTEKA 787
           D  SK   W LS LR AHL L T+ A
Sbjct: 688 DKRSKLPGWILSHLRDAHLNLSTDMA 713


>At1g03190.1 68414.m00296 DNA repair protein / transcription factor
           protein (UVH6) identical to DNA repair/transcription
           factor protein (UVH6) gi:22651569 gb:AY090788
          Length = 758

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = -2

Query: 864 DGTSKAQPWCLSGLRGAHLRLPTEKA 787
           D  SK   W LS LR AHL L T+ A
Sbjct: 688 DKRSKLPGWILSHLRDAHLNLSTDMA 713


>At3g01770.1 68416.m00116 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 620

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 771 DISPRSQVIVTNGCPGPSKPKHTTASRQKTRPGRWXLP 658
           D+ P S+++ +      S+PK    SR  T PG+  LP
Sbjct: 76  DLLPISKIVTSTPASNVSRPKSFGMSRCSTGPGKRVLP 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,070,220
Number of Sequences: 28952
Number of extensions: 403885
Number of successful extensions: 1057
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2081245872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)