Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40134
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    31   0.30 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   6.4  
SPAC17H9.07 |||signal recognition particle subunit Srp21 |Schizo...    26   8.4  

>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 449 SYSYLNFSKTRHRYEIRRTFFLKKRGE-RNVCIYHLKRTCLDVTNVTGRVKNSGNVVWN 622
           S S +   + + R E     + K R E + + +YH K+T   V N+ G  K+ G+ V N
Sbjct: 228 SISNIQLKEAKERLEAANASYQKLRREHKELALYHEKKTHSLVCNLNGERKSFGDFVEN 286


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 464  NFSKTRHRYEIRRTFFLKKRGE 529
            NF   R +YE+ R+ FLK  GE
Sbjct: 3401 NFKLLRKQYEVLRSSFLKSDGE 3422


>SPAC17H9.07 |||signal recognition particle subunit Srp21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -2

Query: 794 LILKPLNLPARSTGNTLPPTTNQETRRVAVVDQNK 690
           L+L    L   STGN +PP   QE     V +Q K
Sbjct: 67  LLLIANKLSYVSTGNEIPPEPEQEVVASPVTEQKK 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,222,202
Number of Sequences: 5004
Number of extensions: 57122
Number of successful extensions: 123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)