Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40134
         (903 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59027| Best HMM Match : UPAR_LY6 (HMM E-Value=0.019)                31   0.96 
SB_59026| Best HMM Match : Attractin (HMM E-Value=8.9)                 31   0.96 
SB_8813| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.1  

>SB_59027| Best HMM Match : UPAR_LY6 (HMM E-Value=0.019)
          Length = 318

 Score = 31.5 bits (68), Expect = 0.96
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +2

Query: 488 YEIRRTFFLKKRGERNVCIYHLKRTCLDVTNVTGRVKNSGNVVWNVTSLSYCLS 649
           Y + ++  + + GE N+  Y  ++ C  VT VT RVK+ G    + +  S C+S
Sbjct: 91  YTVHKSDTVNRVGEANMRFYG-QQLCAAVTLVTERVKDDGTSTTSTSCNSQCIS 143


>SB_59026| Best HMM Match : Attractin (HMM E-Value=8.9)
          Length = 159

 Score = 31.5 bits (68), Expect = 0.96
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +2

Query: 488 YEIRRTFFLKKRGERNVCIYHLKRTCLDVTNVTGRVKNSGNVVWNVTSLSYCLS 649
           Y + ++  + + GE N+  Y  ++ C  VT VT RVK+ G    + +  S C+S
Sbjct: 91  YTVHKSDTVNRVGEANMRFYG-QQLCAAVTLVTERVKDDGTSTTSTSCNSQCIS 143


>SB_8813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +2

Query: 503 TFFLKKRGERNVCIYHLKRTCLDVT-NVTGRVKNSGNVVWNVTSLSYCLSA*TAI 664
           TF+++KR +   C Y   +  L+V  N T   K S  ++   TSL Y +   +A+
Sbjct: 730 TFYIRKRSQTLKCKYTQDKEILEVVGNATLGAKGSSFILTLYTSLDYVVRRKSAV 784


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,224,657
Number of Sequences: 59808
Number of extensions: 426756
Number of successful extensions: 1178
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2597949818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)