Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40133
         (873 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0432 + 3428920-3428934,3429007-3429111,3429341-3429397,342...    29   6.4  

>05_01_0432 +
           3428920-3428934,3429007-3429111,3429341-3429397,
           3429499-3429702,3429790-3429849,3430797-3430923,
           3431420-3431520
          Length = 222

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 18/31 (58%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -1

Query: 207 FKMGHLTCYDMFS--VKRAVIYFFKTVFLAA 121
           FK G L  Y +FS  VK  VI F  TVFLAA
Sbjct: 58  FKAGALVFYILFSLFVKSFVIIFVITVFLAA 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,975,945
Number of Sequences: 37544
Number of extensions: 320343
Number of successful extensions: 431
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)